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GT16356

CSHL Arabidopsis genetrap mutant lines

Original: GT16356

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16356

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23038033 [Map]; Strand: w
      • AT3G62250.1 - [+] show detail - ubiquitin 5
        Distance: 236; Region: intergenic
      • AT3G62260.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 257; Region: intergenic
    Flanking Genome Sequence: GT16356 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGCTACT ACTACGCATG 
    AGAGCAGCCT TAAGAATCAA AGCGTAGAAA CTAATCACTC ATCACAAAAC 
    TAAAATCCTA GATCGAATAT TATTCGAGAA TTAATCACTT GACTAAAAAG 
    AATACAAGAC AAATTCATAA ATATCGCTAC GTTGCCATTG CAAATCATCT 
    ATAAATCTGC AAACAAATGA TTTGAAATGC TCTCACAACT ACGTTATAGG 
    ATGATTCAAG AAGTAGCAAC CAATGAATAT CAAAGTATAG AACGAACAAC 
    ATAATGAATA TCCATAAAAT CCTAAAACCT TCCATAATTT ATAATCCAGA 
    ACGAAAGATG TTCAACATAG AATCCATGAT AACTCAAATT AAAGAGCTTA 
    CAAAATTCCC AAATAGAAAT GCAGTTTTTA AAAGATAAGA GAGAAAGAGA 
    AGGATCGATC TACCGCTACA ACAGATCAAG CTTCAACTCC TTCTTTCTGG 
    TAAACGTAGG TGAGTCCACA CTTACCACAG TAATGGCGAT CAAAATGACT 
    CGCCATGAAA GTCCCAGCTC CACAGGTTGC GTTAGGGCAC TCCTTCCTCA 
    AACGCTGAAC CTTTCCAGAT CCATCGATTT TGTAAAACTG AAGAACAGCG 
    AGCTTAACCT TCTTATGCTT GTGCTTGATC TTCTTCGGCT TGGTGTAGCT 
    TCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23038104 [Map]; Strand: w
      • AT3G62250.1 - [+] show detail - ubiquitin 5
        Distance: 307; Region: intergenic
      • AT3G62260.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 186; Region: intergenic
    Flanking Genome Sequence: GT16356 - 5-prime edge 
    CTTTCTCCCT GGTAGTAGCC TTGTCTTTTT GGTTTCTAAA CGTGTTGCTA 
    ATGATTTTTG AATAAGTTTG ATTTATCTTT AAACTGAAAG TTGTTCAAAA 
    ATAGTTTCTG CTGCATGAAT TTGTAAATCT TATTAAGCGA AGAAGGAAAG 
    TTAGTCTCGA AATGATGATA CATTCCTAGT TTTAAATGGT CGTGTTGAAT 
    GGAGTTTTAT CTTGATCAAA AAAATAAAGA TGCAATTTTA TCTTGACAAA 
    GTGGCGATCA CTTAATCTTT TCTTTTTCGT TATTCATAGA CAACTAACAG 
    TATGTATGTA CACAAAACTG TAATCGCATA CTGTGCACAC AACAAACACA 
    CTTAATACAC AAGTATATCT CAAAAGAGTT CTCTCAGCTG CGTAAAATCT 
    CTAAATACAA AAGCAGCCGT GGGAGAGATT ATTCGTCATC ATCAATTGTA 
    TAATCATCGG TTTTCACCAG AAAACACACT AGTTTCAGCC ATCCAACAGA 
    TTCCTCAAGC TACAGAAAGC TTCGGGCGAA AGACTAAAAC ACCTTCTCTT 
    CTCCAATGGC ACCACCGGCT TGTCCCCTCT GTCCATTGTC ATGAAACATA 
    CCACCACCGC AGTTAAATTA TCAAATGAGT TCCGCCCCAG AGGCTCCATC 
    ACCAGCTCTC GCGCACATCT TGTTGGATCG TTG

AT3G62250.1

Model type
Protein coding
Short Description
ubiquitin 5
Computational Description
ubiquitin 5 (UBQ5); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12703 Blast hits to 7391 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5541; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62260.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G48040.1); Has 7561 Blast hits to 7526 proteins in 871 species: Archae - 12; Bacteria - 1200; Metazoa - 1621; Fungi - 783; Plants - 2603; Viruses - 9; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR