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GT16357

CSHL Arabidopsis genetrap mutant lines

Original: GT16357

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16357

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 80487 [Map]; Strand: w
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16357 - 5-prime edge 
    TCCTACTTTC TCTATAATTA GAGATTGATG GTCGAAAGGC ACTTTGGTAG 
    GCGGTAACCA TGAAGCAGAG TCGATGAATT GGGTAACGTA AACTCTCGAG 
    CTTCTTGGAT ATCAGATATC ACGTGAAACC CGGCCCAATC AACCCGGTTC 
    TCTGTCCCCG AACCCGGTCC CGAGTTTTGA TACTCCCCAT AATACAACGT 
    GCTTAGAGCC GTTACATTAT CCCAATCAAT CCATCCGTTG GGTTCGATCA 
    ACGTATCAAG ATACGTTCCG ATCACCACGG TCCGTGCGTA CGACCTCCAC 
    GGACGGCCCA AATACGTTTT CACGCCTCCT AACTGTACCC CCGGAGCTCC 
    TTTCACCACG GAGTTATGGA TTACGATTCC TGTTGTCTGA TTCGGGTTGA 
    ACCGGCTCTG TGCCGTTATG GTGTTGACTC CATTCGGTGG GTTACGTGCA 
    AATATCCGAC AGTTTTGTAA AACAGCTGCG GCGTTTCCGA AAATGAAGTC 
    AACGGTTCCG TATATGTCGC ACTCCCTGAA AAACTGACGA CCAGAGTGCA 
    CGTAGAGTGT GTCTTGATAG CCTTCAATGC TACATCTGTA AAACACTGAC 
    ATGTCTGAAT TCGATCTGAG AGCCACCGCC TGATGGTTTT CCGGTCCTGC 
    CGTGTTCCTG AT

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR