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GT16358

CSHL Arabidopsis genetrap mutant lines

Original: GT16358

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16358

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2946383 [Map]; Strand: w
      • AT5G09460.1 - [+] show detail - sequence-specific DNA binding transcription factors;transcription regulators
        Distance: 0; Region: intron1 (5UTR)
      • AT5G09461.1 - [+] show detail - conserved peptide upstream open reading frame 43
        Distance: 0; Region: intron1 (5UTR)
      • AT5G09462.1 - [+] show detail - conserved peptide upstream open reading frame 42
        Distance: 0; Region: intron1 (5UTR)
      • AT5G09463.1 - [+] show detail - conserved peptide upstream open reading frame 41
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16358 - 3-prime edge 
    TCTATCCTTT CAATTGTTGT GAATGTTTGG TTTCTTTGGT TTGTTATTAC 
    TGGAATTTGA TGAGATGATT CTCTGTTTTG TAACAGAATT CTTCTCTCTT 
    TCTCTGGATC ACAGCAAAGC AGTGAATGAG AAAAACAGCA TGAGTTGGTT 
    CACAAGGTCT GTTGATGTGT ACCGTAAAGT TGTGAGCTTG AATCTGTATT 
    GCCGAGTTAT TCTGTAAACT TTTTCTCTGC CTTGAATATA TTCATCTTCA 
    ATCTTCTTCT AAATCCTCAG CCTTTTCTAA ACTCTTTAAT AATGGGATCC 
    CAACGTTTCT ACGTTTTCCA CTGTGACCAA TATAGGATCA TCTAAACCCT 
    TAAAGCTTCT CTTTTTCTTC TTCAAGTCAT CTGTCTGTTG GTGACTTACT 
    CTGTTCTGTG GATAAACACT AGTTTTACAT TCGAGAGTTT GGACTAGTTA 
    TTATTATGGT AAGTCAATCA CCTGGTCAAA

AT5G09460.1

Model type
Protein coding
Short Description
sequence-specific DNA binding transcription factors;transcription regulators
Computational Description
sequence-specific DNA binding transcription factors;transcription regulators; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G64340.1); Has 178 Blast hits to 178 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 1; Plants - 159; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09461.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 43
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF43 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1
Computational Description
conserved peptide upstream open reading frame 43 (CPuORF43); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 40 (TAIR:AT5G64341.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09462.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 42
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF42 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1
Computational Description
conserved peptide upstream open reading frame 42 (CPuORF42); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09463.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 41
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF41 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1
Computational Description
conserved peptide upstream open reading frame 41 (CPuORF41); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR