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GT16370

CSHL Arabidopsis genetrap mutant lines

Original: GT16370

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16370

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 227756 [Map]; Strand: c
      • AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -360; Region: promoter
      • AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -561; Region: promoter
      • AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT16370 - 3-prime edge 
    CCCTAACAGT CTCTACTCTG TCTTGAACAC TGAAGCAGGT AATTCCGATA 
    TCTTTTTTCT TTGTTCTATC GCCGGAGAAA TGAAAGAGAT GTTGAACTGA 
    GAGTTTTTCC AAGATTCGGA TGAGTTTTCA TATGATTGGT TGCTTTGGTT 
    TTGTAGGTGT GGAGTTCCTT GGGAATGTGA CCTTGTTGCA GCGATTACCT 
    AGTTCTTCTT TGAAGAGAAT AGCTGAAGTT GTTCTCTTCA AACGTTATGG 
    TCAGTGATTC TGGGATTTTG CTTTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13576384 [Map]; Strand: w
      • AT2G31920.1 - [+] show detail - Plant protein of unknown function (DUF936)
        Distance: -17; Region: promoter
    Flanking Genome Sequence: GT16370 - 5-prime edge 
    CCTACTTTCT CCCTGTTGAG AAGTTGGAGA GAACTCCAGG AGTGAGGGAA 
    GCCATGGTGG GAAAAGAAGC TGAAGCATCT TTTGGGAGAA GGAAGAAGAA 
    GAAGAGTGGG AAGGAATCTC AAAGAGAGAG AGAGAGAGAG GTGTCTCGGG 
    GAATGTGGAG AGTTCGTCGT TTACTGTGTC GGGAAAAGTA AACAGTTTTG 
    TCTCTCTGTC TTCGAGATTT GGTAAGGGCT GCAAGTAAAA AGCTTTTGTT 
    GGTTGCAGGT GTAAAGCACG AGCCTTTTTG TCTCTTTTGT AATATCCGAT 
    TGTGATTTGC AAGTGAGACT TTTTAGCAAT ATTTGATGTA CACTACCTAC 
    AACATACTAT GCATGCGATT AGGATGAAGA TTTCTTTTGT CATCATAAAC 
    CTATCTAATC CTAACATCAT AAAGCCTTTT ACACACATTT AAGCGTGTAT 
    TGTGATGGGC CAAGTCCAAC TAAAATTACT CTATAGAGAA AAAATAATTG 
    TAAGAATATT TTCATGCAAG GCCTGTTTGA TGATTAATAC CTTGACAAAT 
    TTATGGGGGA GATGCTTGGA ATAGAAAACT TAAGTGAAGT GTCCAATCAT 
    TTACTTACCT GTGTTTGTGT TGAGTGTTGA CACTCCAACT CGCCCATCAG 
    GTCGCACTCC AACCAAACTT CCAAATTTTG AGAACTTGCT TTG

AT2G31920.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF936)
Computational Description
Plant protein of unknown function (DUF936); LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT1G23790.1); Has 236 Blast hits to 171 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00500.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00500.2

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.2

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.3

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR