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GT16384

CSHL Arabidopsis genetrap mutant lines

Original: GT16384

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16384

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18290209 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: -834; Region: promoter
    Flanking Genome Sequence: GT16384 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTATTTCACC GTTTTCATCC 
    CTATGTAATA ATATAGGGAG CAGGTCGGAG ACTCAGAGAG TGACCTTTTC 
    TTGCTCGTCC ATTTATTAAT AATTTCATTA AAGAGAAAAT CTGTAGAGTT 
    GACACTTTTT AAAGTCTAAT TATTAGGGAT ATATACGTAA TTTGGTTTGA 
    AAATAAATAT CAAAATCTAG CTAACTTGAT ATCAGTATGG GTAAAAGATA 
    GGAGTACCTT TTGTTGTTGA TTTAATTGAC GATCTAGTGT TAACCCAGAG 
    AATTCTAATT AGATTAGCCT CTTTCTCTCA TCCGAAAGTT GAAGTTTAAT 
    AAGTTAATCT GATATTTGTA AATAACTTGA ACAGTAAATC ATAAACAAAG 
    AAAAACTGAT TTGGTTGCAC AATTTAATTA GTGAGGTGAG GTCTATCACA 
    ATCACTGGTT ACTATAGTGA TAAAGATCCT GATTATGACA GTGACTGTGA 
    GCTGGTGAGG TCCAAGAGTA CAAAAACAAA TTATCTAAGT TATCAAACTA 
    TAAACTATAT AATTCGAAAT ATATTAATTT TGTTAAATCC AAAACCAAAT 
    TGCATGCAAA TGGTCAGTTT GTAAATAGTC TACGTTTGGT CCAATTACTC 
    TTTACTCTTA AGGTTCTTTA CTATATTCAA ACCCACTAAA TCTACTTGCA 
    TATAACACAT AGAGACACAA AAATTAGTAT TTAAAACATT TAGATAACAG 
    ACAAAAGAAA GAGAGGCTCC TAATAAAGGC GCAATTAAAA ACCGGTCAGA 
    AATACACCAA TTGTGAGACT CAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18290156 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: -887; Region: promoter
    Flanking Genome Sequence: GT16384 - 5-prime edge 
    CTTTCTCCCT GTTATACAAG GTCAGCCCAT TTAATTTTAA TAAATTTTAT 
    CATTTCATTT TTATGGATAT TTTAATAAAA ATTTAATTTT CAATTAGAAA 
    CATAGTCAAA TATGTAATTT CATCAAATGA AAATAGAAAT ATACTATCTT 
    TTAAGACCTA TAGTATTCTA TAAAATTGTT TTCTTATTGT GTTTAGTCAA 
    TATGTATACA ACTCTAAGTA AATAAACGAC TACAGTTATT TTATTCACAT 
    TTTTTTCTAT CAAATTTGTA GTCCATTTTC TTTTGTTTGA CATGTTTATT 
    TTTTTGCTTG GTAACAGTGG AAACATCAAA TTTAACGCTA ACTTTCGAAT 
    CTTACGTCAT AACGTGATTG TTGGCGTGAA CAATAATTCT TCCCCAGCCT 
    TAACAATTTA ATTTTCGGCG AATCTATAAT CTTTATAAAT AATGGAAAAT 
    TTCAGACATT TTCTATGAAT TAAATTTACA AAAACATGCT TTTTCTTTAA 
    CTTTTTATAA GGAAAATATC CAAATTTGAA CGGTGTTTTA ATTATTATGG 
    GTATATATAA AAAAAACTTA TCCCTATTAT TTTTTTTTCT TTTTTATAGG 
    AAAAAAGTTT TTACACGATT AAACTACAAA GTAAATTCAA ATAAATATTT 
    AACATATTTT AGATTTTGAA AAGTTTATGT TTTCACAATA CTTTA

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR