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GT16392

CSHL Arabidopsis genetrap mutant lines

Original: GT16392

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16392

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4743896 [Map]; Strand: w
      • AT5G14700.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -450; Region: promoter
    Flanking Genome Sequence: GT16392 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TCATAATATA AGAAGAAGAA AAAACCCTGT ATAACTTTGT AATTACTTGA 
    TTTTTTTAAA CAAATTCTAT TACATTTACA TACTCCAACA ATAATAAAAA 
    TTAAGAGACT AATAACATAA TTTAGTTCTT GATAAACTTT GATATTTACT 
    TAGTCACTTC ATATACATTA CCATAGGTGA TCTGAAAGAT ATCAGGTTTT 
    TGGAACAAAT AAAAACGTAT TTAACTATTT ATAGTCTTTT TTATAGGTAA 
    AATAATAAAT ATACACCGTA GATGGGATCG TATTCGTATA AAGAAAGGAA 
    GCCAAGCTGA GCCGATAAAG CTGAATTGTA TTACACTTGT CTTATTTTTT 
    TCTTCAAAAA AATGAGAGAC TCTTTAGCAT TCTCGTGTGA TGTGTAACGG 
    CCTCTGTTTC TTTCTCTCTA TAAATATCTT CTTCCTCATT TCTCAATCCT 
    CTGTGTATCT CTTTCTACCT TCTCTGAACC TATAGAGCCA ACGAAACCAG 
    AGGACAGTGA ACAAAGAATT GTATAATTCG ATCTCAACTC GTTCCTTTGT 
    TGATTCTTAA CTCCGACTAT TATGAGGATT GTACGTGCGA CGGAGACGTT 
    CTCGGCGGAG CTTAAAGAGT TCATGTGCGC CGCTGTGCAA AGGAGGAAAG 
    ACGACGACGG ATTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18290114 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: -929; Region: promoter
    Flanking Genome Sequence: GT16392 - 5-prime edge 
    AAATTTCCCC ATTTCGTTTT TATGGATCTT CCAATAAAAA TTAAATTTTC 
    AATTACAAAC ATAGTCAAAT ATGTATTTCC CTCAAATGAA AATAGAAATA 
    TCCTATCTTT TAAGACCTAT AGTATTCTAA AAAATTGTTT TCTTATTGGG 
    TTAAGCCAAT ATGTACACAA CTCAAAGAAA ATAAACGACT ACGGTTATTT 
    TATTCACATT TTTTTCTATC AAAT

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14700.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G23910.1); Has 4116 Blast hits to 4108 proteins in 752 species: Archae - 4; Bacteria - 797; Metazoa - 69; Fungi - 490; Plants - 1968; Viruses - 42; Other Eukaryotes - 746 (source: NCBI BLink).
Link
InterPro Scan - TAIR