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GT16405

CSHL Arabidopsis genetrap mutant lines

Original: GT16405

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16405

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 281116 [Map]; Strand: w
      • AT2G01630.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01630.2 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16405 - 3-prime edge 
    GTAGAAGGTA TTTTACCGAC CGTTACCGAA CCGTTTTCAT CCCAGGGATG 
    AAAGCAGGAA TGGGAAAATC CCGTACCCGA CCGGAATCGT ATTGGTTCAA 
    TCTCACTCGA CGAATTGCTC ACACCGGGGT TCAAGTTATA ATCTCAGTAC 
    CTAACGACCA GCTTCTCGGT ATCAGCCAAT CAAATGCAAC CGCAGCCAAT 
    TGGGTGACTA GAAATGTAGC TGCATATTAC CCTGCGACCA ACATTACCAC 
    AATTGCTGTC GGATCAGAAG TCCTAACCAG CCTAACAAAC GCAGCTTCTG 
    TCCTTGTCTC AGCCCTCAAA TACATACAAG CTGCTCTCGT CACGGCCAAT 
    CTCGACCGTC AGATCAAAGT ATCGACACCG CACTCTTCAA CCATCATTCT 
    TGATTCTTTC CCTCCTTCGC AAGCTTTCTT CAACAAGACT TGGGATCCAG 
    TTATTGTCCC TCTCCTCAAA TTCCTACAGT CCACAGGATC GCCATTGCTG 
    CTCAACGTTT ACCCGTATTT CGACTATGTT CAGTCCAATG GAGTTATACC 
    GCTTGACTAC GCGCTTTTCC AGCCTCTCCA AGCCAACAAA GAAGCTGTAG 
    ACGCCAACAC ATTGTTACAT TACACAAACG TTTTTGATGC AATCGTAGAC 
    GCTGCTTATT TTGCAATGTC TTATCTTAAC TTCACCAACA TTCCAATCGT 
    GGTCACAGAA TCTGGATGGC CATCTAAAGG AGGCCCTTCT GAGCACGACG 
    CAACGGTAGA GAATGCAAAC ACTTACAAAT AGCATTTGAT CCAGCATGTG 
    ATCAACAAGA CTGGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107180 [Map]; Strand: c
      • AT2G01175.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -964; Region: promoter
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (3UTR)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT16405 - 5-prime edge 
    TATGTCTCTG CAGATGGATT CAACATCTCT CGAAAACATG GAATCTGGCA 
    CTTCCACCGC TCCCAGATGA TCCTCCTCTC TTATTATTTG ATTCATTATT 
    TGGTTTTTCA TTTTGATT

AT2G01175.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01630.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G66250.1); Has 2926 Blast hits to 2856 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 93; Plants - 2819; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01630.2

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G66250.1); Has 2147 Blast hits to 2131 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 5; Plants - 2133; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR