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GT16409

CSHL Arabidopsis genetrap mutant lines

Original: GT16409

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16409

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 221733 [Map]; Strand: w
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: -587; Region: promoter
    Flanking Genome Sequence: GT16409 - 5-prime edge 
    TCCTACTTTC TCCCTGCCTA CTAGAAGCTG TCCCAAAGTA AATAACAATG 
    TTTCTTTTGG TAATAGTAAT TCACATTTTA TCCTAAAAAA ATCTTCAAAA 
    AATGAATATG AAAGTTACGA CTTACGAGAG AAATGTAAGT GTAAAATAAT 
    GAAATTCAAA TTTAAAGCTT CAATGATTTT GTTAAGACAG AGAGACGTAG 
    CGCATTGATT ACAGACGCGA CACATCTGAC ATACAACATT TGCCACTACA 
    ATGCACGACT GTCTTCGGAT TAATACATTA ATGTTACATC GTTAGTATCA 
    ATCTTACAGA TTATAAATAG CTTAGCCGAT TGTTTAAGAT AGTATTATTC 
    TAAATTCATC TTCACTCGA

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR