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GT16411

CSHL Arabidopsis genetrap mutant lines

Original: GT16411

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16411

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT16411 - 5-prime edge 
    AAGCTCCACC AATCGACACT GGGAATCTCA ATGCTTCTTT GTGTTGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26445372 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: -938; Region: promoter
      • AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: intron1 (CDS)
      • AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT16411 - 5-prime edge 
    TTTCATCCCT ACTCCCAGCC AAATTTGGGC AATTTCTCCC CCTCTTCCTT 
    TTTCCTTATC CGAAACAATT TCTCGAACAA TCTGGTTAAA AAGAAGTTGA 
    TTTTGATTCT CAGACGGCTC CGTGACCAAA AACGGAATCT GTGGAGCTCT 
    ATACGTCGCA GATCCTCTCG ACGGTTGCTC ACCGCTTCTC CACGCCGCCG 
    CATCCAACTG GACGCAACAC AGAACTACTA AGTTCGCTTT GATAATCCAG 
    AGGCGAATGT TCTTTTGAGG ATAAGCTGCT CAATGCCCAG AACTCAGGTT 
    TTCAAGCTGT GATTGTCTAT GACAACATTG ACAACGAAGA TCTCATCGTC 
    AGTAAGCCTT TTGCCTCCCA CCCAAGTTTA AAATTCCATC TTTTCTTCTC 
    CTGATGAGCT AGGGTTGAGC TGAATTTCAT TGGAGTTATT TAATTTAGTC 
    AACGCCCCCA TAAGTTTGGA GATTGACCAA CATCTGTTTT GCACAGTGAA 
    GGAGAACCCT CAGGACATTA CAGTTGATGC AGTCTTCGTT TCAAATGTCG 
    CCGGTGAGAT TTTGAGAAAG TACGCGAGAG GCCGAGATGG TGAATGCTGC 
    CTTAATCCGC CAGACAGAGG GAGCGCTTGG ACTGTGTTGG ACATCTC

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.1

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.2

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR