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GT16419

CSHL Arabidopsis genetrap mutant lines

Original: GT16419

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16419

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26058513 [Map]; Strand: c
      • AT5G65210.1 - [+] show detail - bZIP transcription factor family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT5G65210.6 - [+] show detail - bZIP transcription factor family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT5G65210.5 - [+] show detail - bZIP transcription factor family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT5G65210.3 - [+] show detail - bZIP transcription factor family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT5G65210.4 - [+] show detail - bZIP transcription factor family protein
        Distance: -29; Region: promoter
      • AT5G65210.2 - [+] show detail - bZIP transcription factor family protein
        Distance: -32; Region: promoter
    Flanking Genome Sequence: GT16419 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC TAGTAGTGCT 
    TAACATTAAT TTTTATCATC TTATCTATTT GACACCTTCC AAACACTATT 
    GGGGAAATGG CTTCTTCTCT CTTTACCAGT GTAGGTTTAA GGTTTTAGAT 
    TTGAAGGCGG ATGGTGAGGA GTTTGTGTTG ATGAAATGGG TGATTTGAAG 
    TTAAATCCTT TAAGTTCTTT TAGCCTGTCA TTACAATATA TGTTTCAGTT 
    GTGATCTTTT GGTGCTCTCC AAGGTCTTAG GGAATCTCCG TGTCCCCTCT 
    GGTTTCTTTC TTTGTATAAA GTCTCTGGAA TTTAAAGATG ATTTTGTCCT 
    GTTTTCTTCG AAGAATTTGG CGAAGAAACA TCAAAAGTTC ACTATTTGCT 
    TTACGTGTTA TGCTTGTTTG ACTTTGTGTG ATCTAACTTT TGGTTGAGAA 
    CTAATGCTCA TCTTTTGTTC TTTGGAATGT CTTGATCTGC TTGATTTTGA 
    ATGCTTTGTC ACATTGTTTA AACAATTTGT TCTTTGTTTT CAGTTGAGGA 
    AAACATGAAT TCGACATCGA CACATTTTGT GCCACCGAGA AGAGTTGGTA 
    TATACGAACC TGTCCATCAA TTCGGTATGT GGGGGGGAGA GTTTCAAAAG 
    CAATATTAGC AATGGGACTA TGAACACACC AAACCACATA ATAATACCGA 
    ATAATCAGAA ACTAGACAAC AACGTGGGTA CTTTTTTTAC TTCATTGGTT 
    CTTCAACCTC CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26119630 [Map]; Strand: w
      • AT5G65350.1 - [+] show detail - histone 3 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16419 - 5-prime edge 
    CTTTATCCTC TGAAACCTCA GATCCGTTTT GAAATCTTGA GCGATCTCAC 
    GAACAAGTCG CTGAAACGGA AGCTTTCTGA TCAAAATCTC GGTACTCTTT 
    TGGTATTTCC TAATATCTCT CAACGCAACA GTTCCTGGAC GGAATCTGTG 
    TGGCTTCTTC ACTCCTCCCG TTGCTGGTGC AGATTGTCTC GCCGCTTTTG 
    GCGCTAATTG CTTCCTCGGA GCTTTTCCTC CGGTGGATAT TCTAGCAGTC 
    TGCTTGGTAC GAGCCATATA GAAAGAATCA ACTGGTTAAT TTTATTAATT 
    CTGGTTTTGA TTTCTCGAAA TTGTTATAGA AATTGAAAAG TGTTGAGTTG 
    GTTATGTGGA AAAGGAGATG AAAATGTGGA GGGAGTTTTC AAACTTTGCT 
    AAAGAAGGAG AGATTTTGAT CCGTTAGATT TGATATCTAA TTAACGGTGC 
    GTATTGGATA AAGTGTTGAC GATCCTCGTG ATACTTAATC CACCAATCAG 
    AAACATTCAT CTCACTCGA

AT5G65210.1

Model type
Protein coding
Short Description
bZIP transcription factor family protein
Curator Summary
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational Description
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 731 Blast hits to 729 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65210.2

Model type
Protein coding
Short Description
bZIP transcription factor family protein
Curator Summary
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational Description
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65210.3

Model type
Protein coding
Short Description
bZIP transcription factor family protein
Curator Summary
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational Description
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 731 Blast hits to 729 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65210.4

Model type
Protein coding
Short Description
bZIP transcription factor family protein
Curator Summary
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational Description
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 731 Blast hits to 729 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65210.5

Model type
Protein coding
Short Description
bZIP transcription factor family protein
Curator Summary
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational Description
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 731 Blast hits to 729 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65210.6

Model type
Protein coding
Short Description
bZIP transcription factor family protein
Curator Summary
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational Description
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 674 Blast hits to 672 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 649; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65350.1

Model type
Protein coding
Short Description
histone 3 11
Computational Description
histone 3 11 (HTR11); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR