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GT16453

CSHL Arabidopsis genetrap mutant lines

Original: GT16453

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16453

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1160731 [Map]; Strand: w
      • AT5G04230.2 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: 0; Region: exon1 (5UTR)
      • AT5G04230.1 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: -100; Region: promoter
    Flanking Genome Sequence: GT16453 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATATA TTCGACTCGA 
    GTGTGATTTT GGGCTGGTCA AGTATCGATT TCTACGATGA TTATATAGAT 
    ATATGTAGAC AAGTAGTAAA ACATGTGTTT TAAATAATGT GAGTGAGTGG 
    GTTGGTTTGT GCCTTGGTGG GTATATATAT AGAGGGAAAA CAATGGGGTT 
    AACTAGTTGA AATGTTTAAG AACATCTTAT TAGTGTTTGA TTTAAAATAA 
    TGAATAGGAT TATTCGTTTT TAGCCATTAA AAAACTTACT TTCTAGTAGA 
    TATAAAAAAT GCTTCAAATA TTCGATTAGT TTCAACCAGT TTTTTTTTTT 
    TTAAAACTTT TTTCCCGAAA AAGGGGAAAG GTTTCCTTTT AAATTTTTTT 
    TCAAAAGGGG AACCCCTTTT TTTTTTTTTT AAAAAGAAAA ATTTAAAAAT 
    TTTTGTGAAG TTTCCCCCAA AAAAAAAAAA ATTTTTTTTT GTAGGGCCCC 
    CCCCTTTTTT TAACCGGGAA AGGGTAACGG AAAGCCTTTA AATTTTTTTC 
    AACGGGGGAT TTTTAAAGGG TTTTTTTTTG AAAAACCCTC AAAAATTTTT 
    TTTTTCCCCC CCCAAAAAAA AACCTATTTT TTTGAAAAAA ATTTTAAAAA 
    AAAAAAAAAG GGGGGTGAAA TTTTAAAGGG GGCCCCCAAA AATTTTTAAA 
    AAAAAAAAAG TTATTATTTT TT

AT5G04230.1

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1); Has 4848 Blast hits to 4828 proteins in 1399 species: Archae - 40; Bacteria - 2936; Metazoa - 80; Fungi - 127; Plants - 1170; Viruses - 0; Other Eukaryotes - 495 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04230.2

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1).
Link
InterPro Scan - TAIR