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GT16459

CSHL Arabidopsis genetrap mutant lines

Original: GT16459

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16459

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 583783 [Map]; Strand: c
      • AT2G02210.1 - [+] show detail - transposable element gene
        Distance: -1733; Region: intergenic
      • AT2G02220.1 - [+] show detail - phytosulfokin receptor 1
        Distance: 195; Region: intergenic
    Flanking Genome Sequence: GT16459 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATCAACA GAGTATCCAC 
    AAAGCAAATC ACAGAATAAA GATGTAACAC AAATTATTAA TCTATGTTGC 
    TCATTTAAAT TGCTTGAGAC ATGTTTTTTC AAGAACTCAT TATTTCTGAA 
    ACACTACAAA AAGATTTTTC ATTTTTCTGA GACAGTATAT GTTCTGTCTA 
    GTATCTTTAA TGTCTGAATC TGAATCATAA ACTGAGATAA AAAAAATGGA 
    AGAAGAAAAC GAAGAAACAA ATTATTATCT GAAAACTATT TACATTGTAT 
    CTCAAAAGTA TGAAAATCAC TCCCTACAAA ATGTATCATA GTGTCTCTGA 
    TATTGTTCCT CTTTCTTCTA GACATCATCA AGCCAAGAGA CTAACTGTTG 
    AGTCGTTGGC CTCTGTTTCG GGTTTTCGCT TAAACATAAA CAAGCAATCT 
    CGAGAACCCG AAACATCTCT TTATCATTCT CTTTACTGTA TATTAACGGA 
    TCGAAAAACC TCGCTTTGCT CGACTC

AT2G02210.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At3g32900
Link
InterPro Scan - TAIR

AT2G02220.1

Model type
Protein coding
Short Description
phytosulfokin receptor 1
Curator Summary
Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).
Computational Description
phytosulfokin receptor 1 (PSKR1); FUNCTIONS IN: peptide receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phytosylfokine-alpha receptor 2 (TAIR:AT5G53890.1); Has 188205 Blast hits to 128830 proteins in 4018 species: Archae - 120; Bacteria - 18455; Metazoa - 56562; Fungi - 9680; Plants - 79633; Viruses - 405; Other Eukaryotes - 23350 (source: NCBI BLink).
Link
InterPro Scan - TAIR