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GT16479

CSHL Arabidopsis genetrap mutant lines

Original: GT16479

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16479

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3280 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: GT16479 - 3-prime edge
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCAATGT 
    TTACAAGATG ATAAAGAAAA TATGGACATG AGTGAAACAG AGACCAATGA
    GTATCCGCTG AAATAGCTTT CTTAGTTAAA AGATCCGCAC GTGCATTTTG
    TTCCTGATGC TTGAAGGTGA ACTTTAGTGA TGTAAAAGTT GGGATCCAAC
    TGTATATGAT ATCAAGATAG TGTTGTAGTC GGGGATTTGG AGACTTCTGG
    TTAATTAGTC GATTAATATT TATGTTATCA CCTTCAAAGA TCACCTTTGT
    ATACCCATAG GCCCTAGCGG CTTGAATAGC CCAGATAAGT GTCGAGCATT
    CAGCTTCTTC TGGAGTCATT CGACCTTGAA ACTACCCCAT ACCGCATTCC
    AAAACCGTGC CATGAGAGTT GCGGAATCAC TATCGG

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR