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Mutant Lines
GT16493

GT16493

CSHL Arabidopsis genetrap mutant lines

Original: GT16493

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16493

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 183215 [Map]; Strand: c
- AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)
- AT4G00420.2 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)
- AT4G00420.3 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)

GTAGAGGTAT TTTACCGACC GTTACCGACC GTCTTCATCT CTCTCGACAA 
TGCACAGTTA CAGAAAGAAC AGTGGCTATT GCAATGAAGT AACCAAAAAG 
GAAAATAAAA AGGAGAGACA GTTATCTAGG AGCTCACAGT TATGGCAAGA 
AGCTGAGCTT TTGGATTCCT GCTACCAATC CGTTTTTTAA ATGCCTTTCA 
CAACATCTTT TGCTTGCCTG CAAAACAGCA ACCGCTTTCA GACACCACAT 
AGGATCGTCC AATTAGTATA AACACTGAAA TATCCTTCTT CCAATCACAA 
AGCATAAATA TTTCCCAGCT TCTACAATAA AGCCCTATGA AAGATGACTA 
ACTTGAGCAA AACAGTAGGC CACAAGTATT CGAATTGGTC CTAGAAAACA 
TGGAAATATC TAACTATGGT AAAGAAACGA AATTTGATTA TCTTAACTAT 
CTTAACTATC TTAACTATCA TATATCTTTC CTCTCCTTAT CTAAAACCCT 
TTGATTAGAT TACAGAAACA ACACTTCAGT TCCTAAACAA CAATAGACAA 
ATATCTTCTT TGCCTAAACA ACAAGACAGA CCCAAATATT TAGTAGTTAA 
ACAGCATTTT GCTAACCACA CAAGACAATT CAAATCACAC ACACAAGACA 
TTT

5 prime edge [+] show sequence

Chromosome: 4; Position: 115363 [Map]; Strand: w
- AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
  Distance: 0; Region: exon2 (CDS)

TCTACTTTCT CCCTGGACAG AGAGTGACTT GGCTTTCCAT GTAACACTGT 
TGGGACCTAG TTGTTGTGGG ATTCAATATG GTTCATCTCA CTCCACACAA 
GAACAACCTT TGTGACGGTG AGTTGTGTTC TGTCTCTGGC TCTTCAAGAA 
ACGTGGTTTG CTTTTGGAAT GTGGATCAGT GAGTAGAGAT AACCAGTTTG 
ACTATATAAC ACTTAGATTC TATTATTTTT CAGAGAAAAA GAAAGTGAAG 
GAGAATCCAA ATGGAGAAGC AGAGTCTTCT TCACGAGATC CCTCTTGTTT 
TGTGGCTAAT GTTGCGCCTT CGAGTCTACG TTATGACTTG ATGGTATTTG 
ACTCTTAAGA ACCCGAAAAG AAACTCTCAT TCTAGGGTCT GAACTCATGT 
TGTATTCTAA TGAATTTTTC AGAGATTTCC AAGGGGTTTT GTGAGGGATA 
ATGGTGTAGT CGGATCTGGA GAGATTGTTC TGATGAATGA AAAGGGCAGA 
TCATGGAATT TTAACTTGAG ACAAAAGCCA TCAAACGGAA CAGTTTATGT 
TAGAGGAGGG TGGGTGAGTT TTTGTGATGC CAATGGGCTT AAAGCTGGCG 
ATAACTACAC TTTCAAACTG ATCAAAAGAG CAGGAACTCT TGTTCTACGT 
TTGTTACCCA ATGAGCCAAA AGAGGAAGCT AATGAAG

AT4G00260.1

Model type: Protein coding
Short Description: Transcriptional factor B3 family protein
Computational Description: maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.1

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.2

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 72 Blast hits to 72 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.3

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR