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GT16515

CSHL Arabidopsis genetrap mutant lines

Original: GT16515

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16515

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666348 [Map]; Strand: c
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -272; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16515 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATATA TTTGGTGGTG 
    GGTCCTGGAG GGAAATGAGT GAGAGGGAGC TCTGTTCATA CATTCTATGT 
    TTTTAAATGA TTAGTATTTT TCTTTCATCT AATACTTGCT TTTTGTGCTA 
    GGAATTTCGA TTTTTGGGAC TAATTTATCG AGTATATATA ATTGGATAAG 
    TGAGTTTGGT ATTAATATTA AGAGCAATTA GGTTGGTTAT CTTGCCAAAC 
    AGTAGACCCC TGTCGTTTTC TTAGTCATTT AAGAAGTAAT GCTTAAGATT 
    CAGGCCTCTA ATCTGGTTAT GATAGTGAAG AGGATCTGTA AGTTTACCTA 
    TACGACCTGT TGAAAAGGAC CTCTGGTGTT TGTTACTATG CGTTTCTGAT 
    CAATATAGAC ATAGTTGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14665932 [Map]; Strand: c
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: 0; Region: exon1 (NonCoding)
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16515 - 5-prime edge 
    CCACTAAACA TCAAAGCAAG GGAAATCTCC CTGTTTCCAG AAAAATGAAA 
    TCTATCTGGG GAGGAAATGG AAACAAATAC GGATTCAAGA GAATAGATTC 
    GAATAGAAAC GAACCTGATG GATCTCAGCG ACTCGAGACG GAAGAGAGAA 
    TCGCCGAGAT TGTGAATGAA TCGCCCCGGC CCTGTTTTGG AGGTTTGCGT 
    TGGTGTGTGT GTGAGAATTA GATAGAGAAA ACAAGGTCGG TGTAATATAT 
    CTTCTAGATG GAATCTGGAC CGTTGATTGT GAGAGATGCC TTAGATCTCG 
    GAGGCCAACG AATCGTCAAT ATATTCAAAA AAAACAACGG CTGTGCCAGG 
    TTGTTGCTCT TTTGGCTCTC TTCATACATT

AT2G34760.1

Model type
Pseudogene
Computational Description
pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}
Link
InterPro Scan - TAIR

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR