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GT16517

CSHL Arabidopsis genetrap mutant lines

Original: GT16517

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16517

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18416524 [Map]; Strand: w
      • AT5G45450.1 - [+] show detail - Oligopeptide transporter OPT superfamily protein
        Distance: 713; Region: intergenic
      • AT5G45460.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unkno...
        Distance: 90; Region: intergenic
    Flanking Genome Sequence: GT16517 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC GTCATTGTAC 
    CTTGACCAAA AACTCAAGAA TTCTGTGAGA GAAGAAGCCG CTAGAAGAAA 
    GCTTTTGGCC GCCATTGAAA TCAACTACAC ACAGACATAG CCTAAAGATG 
    TTGCATTGTA AAAGTTGAAT CAGTCTAATT TATCTTCGAT TCGACAGAAG 
    CATGAAGAAA CAATCCGCAA TCAAATCCAC TGAAATCAAA ACCCGAAACA 
    CACATTGAAT CTCACAAACA AAGTAACGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2026654 [Map]; Strand: c
      • AT5G06600.1 - [+] show detail - ubiquitin-specific protease 12
        Distance: 0; Region: intron4 (CDS)
      • AT5G06600.2 - [+] show detail - ubiquitin-specific protease 12
        Distance: 0; Region: intron4 (CDS)
      • AT5G06600.3 - [+] show detail - ubiquitin-specific protease 12
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT16517 - 5-prime edge 
    CCCTGGTTTA ATGTTGGGCT GGAATAAGGG GATTAGTTGA ACTTATTGGA 
    ATATAATCAT GTCTATTACT GTCTAAAGCT TTACCTGAAC GCCTGCAACG 
    CACCCTTTTC TACTTCATCA GACTGTAATA TTTACCTGGT TTCTGGCGAA 
    CTTGGTATTA TCAGAACCTA GCTGTAAGTG ACCTTGGTGA TACAGGTCAC 
    TGACATTATG ATTCCTAATT GTGTTGCAAA GACGCAACAT CAATTCAATG 
    CTAGAGAAAG CGATTGGGGA TTTACATCAT TCATGCCACT TAGCGAACTT 
    TATGATCCTA GTAGAGGATA TTTAGTGAAT GATACTGCTT TGGTTGAAGC 
    TGAAGTCGCT GTACCTAAGG TTCTTGATTA CTGGGCATAT GACTCTAAAA 
    AAGAGACTGG TTTTGTTGGA CTCAAG

AT5G06600.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 12
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06600.2

Model type
Protein coding
Short Description
ubiquitin-specific protease 12
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.2); Has 8094 Blast hits to 7303 proteins in 267 species: Archae - 0; Bacteria - 2; Metazoa - 3813; Fungi - 1238; Plants - 1657; Viruses - 9; Other Eukaryotes - 1375 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06600.3

Model type
Protein coding
Short Description
ubiquitin-specific protease 12
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45450.1

Model type
Protein coding
Short Description
Oligopeptide transporter OPT superfamily protein
Computational Description
Oligopeptide transporter OPT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 958 Blast hits to 958 proteins in 298 species: Archae - 10; Bacteria - 365; Metazoa - 0; Fungi - 177; Plants - 389; Viruses - 1; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45460.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR