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GT16524

CSHL Arabidopsis genetrap mutant lines

Original: GT16524

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16524

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18072257 [Map]; Strand: w
      • AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -902; Region: promoter
      • AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -902; Region: promoter
      • AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -902; Region: promoter
      • AT4G38680.1 - [+] show detail - glycine rich protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16524 - 3-prime edge
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT GCCAGGGATT 
    GCACCAGCGG TGGACGTTAA AACCAACGCC GGTTACGCGG TGGAGAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18072259 [Map]; Strand: w
      • AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -904; Region: promoter
      • AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -904; Region: promoter
      • AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -904; Region: promoter
      • AT4G38680.1 - [+] show detail - glycine rich protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16524 - 3-prime edge
    GGTAGAGGTT TTTACCGACC GTTACCGACC GTTTTCATCC CTGCCAGGGA 
    TTGCACCAGC GGTGGACGTT AAAACCAACG CCGGTTACGC GGTGGAGAAG
    AGTGAGTTGG TTATCTCACA AGTGATCGGT TCTTTCTCCC GCCGCCTTCT
    ATCTCTCTAT TATCCACTTT TTGCTTATTA TGATGGATCT CTATCTTTGT
    TAGTTGGTTT TTTCTTGATG GTTTCTGATT AGGACTCTTC TTTTGGTTTT
    GCTACTTATG GTTGGTTTTA TTTATGGTAC TTGTGATATG GGTGAAATGC
    TCTACTTGTT GCTCTGTTTC AAGTGTTCAT AATATGCGAA CAAATATTCT
    GGGTTTTGTT TCAGTCATCT GAATGAATCG TAAGATCTGG ATACTTAAAT
    CTTGAGAGAT CATCGTTTTA TGGTTGAATT ATTTTATGGA TTATGTAACG
    ATTCCCATAG ATACAAAATC TATCTGCTCA TGTTTTGCAT TTAATGGCAT
    TTAAGTTCCA TGGACTGGAA GGAATTGAAT ACCAATTGCA GTCTCCATCA
    TTCTCATTAT TAGACTTTTT ATCTTCGATG TCGTTTGTAT TTTCAATCTT
    TTGTATATCT TCAGAAAATG TAATCTTCTC AACTTCTTTC CACCGTTTCA
    TCATGATCAC ACTGGCATTT TACTGTAGCT CACACGATTT CGGATTGGAT
    TAAGTAAATA AAAGCAGATA TGGGAAGATT TT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18072316 [Map]; Strand: w
      • AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -961; Region: promoter
      • AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -961; Region: promoter
      • AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -961; Region: promoter
      • AT4G38680.1 - [+] show detail - glycine rich protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16524 - 5-prime edge
    TCCTACTTTA TCCCTAATCC CTGGCGAATG TCCCGACTCG CCACAGCTGT 
    AGCAGCTTCC CCCGCCGCCA CCACCTCCAC GGCCACCACC TCCGTAACCA
    CCACCTCCTC CGCCGTATCC GCCTCCACCT CCGTAGCCAC CGCCGCCTCC
    TCCGTAACCT CCACCGCCTT CAGAACACTC GACCAACATG TGACCGGGCT
    CACCACACTT GTAGTAGACG TTGCCTCCTC GACCACCACC TCCTCTACCT
    ACGTATCCAC CACCACCACC GCCGTATCCA CCTCCAGATC CGCGTCCACC
    TCCTCTTCCT CCAACGAAAC CGGCGCTGTT GCCAGATGAA ACACCACCGC
    TGTTTCCTTG GACGGGAGCG CCGACGGGTC CAGAAACATT GATGGCCTTG
    GGACGGTTGT TGTTGTTCAT ATCACTCGAC AAACATACAC CATCTGCACT
    CATACGAAAC AAAAACATAT GGAACCAACC ACTTATCATC AGTTGGTTTT
    GAGTTGAAAA TTCATGATTC CGGTAGTTAC TGACGGGTAC TAGTACTCAC
    CAGCTTCACA GGTTCATTGG GATCTTCGAT TGCAAGAGTC AACTCTTCGT
    TCCACTCT

AT4G38670.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1594 Blast hits to 1578 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 72; Plants - 1416; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.2

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1592 Blast hits to 1576 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 55; Fungi - 72; Plants - 1413; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.3

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38680.1

Model type
Protein coding
Short Description
glycine rich protein 2
Curator Summary
Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.
Computational Description
glycine rich protein 2 (GRP2); FUNCTIONS IN: double-stranded DNA binding, mRNA binding, single-stranded DNA binding, nucleic acid binding; INVOLVED IN: stamen development, vegetative to reproductive phase transition of meristem, response to cold, seed development, DNA duplex unwinding; LOCATED IN: nucleolus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 37 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold shock protein (InterPro:IPR011129), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: glycine-rich protein 2B (TAIR:AT2G21060.1); Has 150401 Blast hits to 55289 proteins in 3379 species: Archae - 285; Bacteria - 51625; Metazoa - 48133; Fungi - 9113; Plants - 13783; Viruses - 1771; Other Eukaryotes - 25691 (source: NCBI BLink).
Link
InterPro Scan - TAIR