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GT16525

CSHL Arabidopsis genetrap mutant lines

Original: GT16525

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16525

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26494571 [Map]; Strand: w
      • AT5G66310.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -3189; Region: intergenic
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 1384; Region: intergenic
    Flanking Genome Sequence: GT16525 - 5-prime edge 
    ATAGGAGTAT TATAATAAGA AAGTAGCATC CAAATCTTTC ATCTCTCTCC 
    AAAAAAAGGA TTGAGCTATA TTTGATTACA AATCTGTACT TTTTCTTTCA 
    CAGCAACAAA TCTGTCTGAC TGAAAGAACT CGATAAAGTC TTATAATTTG 
    TCAACATTAA TTTATTCCAT ATTTCTGTTT ATAAAATCCC CTTAACTCTT 
    CAATAGATTG GGAAAATTTG TCTTCAGTTT TTTTTT

AT5G66310.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G51150.2); Has 12086 Blast hits to 11258 proteins in 438 species: Archae - 14; Bacteria - 210; Metazoa - 5156; Fungi - 1590; Plants - 1989; Viruses - 17; Other Eukaryotes - 3110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66320.1

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR