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Mutant Lines
GT16527

GT16527

CSHL Arabidopsis genetrap mutant lines

Original: GT16527

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16527

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 2026967 [Map]; Strand: c
- AT5G06600.1 - [+] show detail - ubiquitin-specific protease 12
  Distance: 0; Region: exon4 (CDS)
- AT5G06600.2 - [+] show detail - ubiquitin-specific protease 12
  Distance: 0; Region: exon4 (CDS)
- AT5G06600.3 - [+] show detail - ubiquitin-specific protease 12
  Distance: 0; Region: exon4 (CDS)

AAACATCCAA GTACATGGAC AAATGATCAA CATTGTTCCC TTTCGGGAAA 
ATTAATATGC GCCTGCATAA GCAAATCCAA AAAGGTGTCA ACCAATCAAA 
ATGCATACTG GACAAACAAT GGCAAGAAAA AAGTACACTA GAGATAGGTA 
TACACTACTA TTACCATTTG TAACCTCCAA CGACAAATAC ATCGGAGTAA 
TGCTTCCTGG TGTTTTGCCT AGAGAAATTA GGGATAGTCC ACGTGAATTT 
CAGAGTAGGA GGATCCTCAG CTGGCTGGTT CTCCACAGTA CTCGCAGCAG 
TCTCGGGTTG GGTAACTATA AATGCATCAA CAATTAATGA AAAATAAACC 
ACCAGACAAA TGACAAAACC CTAAGCACTT CAAAACCATC AATCCAACTC 
TCA

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 2026620 [Map]; Strand: c
  - AT5G06600.1 - [+] show detail - ubiquitin-specific protease 12
    Distance: 0; Region: intron4 (CDS)
  - AT5G06600.2 - [+] show detail - ubiquitin-specific protease 12
    Distance: 0; Region: intron4 (CDS)
  - AT5G06600.3 - [+] show detail - ubiquitin-specific protease 12
    Distance: 0; Region: intron4 (CDS)
Flanking Genome Sequence: GT16527 - 5-prime edge
```
AGTTGAACTT ATTGGACTAT AATCATGTTA TTACTGTCTT AAGCTTTACC 
TGAACGCCTG CAACGCACCC TTTTCTACTT TATCAGACTG TAATATTTAC 
CTGGTTTCTG GCGAACTTGG TATTATCAGA ACCTAGCTGT AAGTGACCTT 
GGTGATACAG GTCACTGACA TTATGATTCC TAATTGTGTT GCAGAGACGC 
AACATCAATT CAATGCTAGA GAAAGCGATT GGGGATTTAC ATCATT
```

AT5G06600.1

Model type: Protein coding
Short Description: ubiquitin-specific protease 12
Curator Summary: Encodes a ubiquitin-specific protease.
Computational Description: ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06600.2

Model type: Protein coding
Short Description: ubiquitin-specific protease 12
Curator Summary: Encodes a ubiquitin-specific protease.
Computational Description: ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.2); Has 8094 Blast hits to 7303 proteins in 267 species: Archae - 0; Bacteria - 2; Metazoa - 3813; Fungi - 1238; Plants - 1657; Viruses - 9; Other Eukaryotes - 1375 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06600.3

Model type: Protein coding
Short Description: ubiquitin-specific protease 12
Curator Summary: Encodes a ubiquitin-specific protease.
Computational Description: ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR