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GT16532

CSHL Arabidopsis genetrap mutant lines

Original: GT16532

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16532

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14665989 [Map]; Strand: c
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: 0; Region: exon1 (NonCoding)
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16532 - 5-prime edge 
    TTAAGATAGT TATGATTCGT TTTTTGAGAG TCAACAACAA AAATTATCCG 
    ATCTAAACCA CTAAACATCA AATCAATGGA AATCTCAATG TTTCCAGAAA 
    AATGAAATCT ATCTAGGGAG GAAAGGAAAC AAATACGGAT TCAAGAGAAT 
    AGATTCGAAT AGAAACGAAC CTGATGGATC TCAGCGACTC GAGACGGAAG 
    AGAGAATCGC CGAGATTGTG AATGAATCGC CCCGGCCCTG TTTTGGAGGT 
    TTGCGTTGGT GTGTGTGTGA GAATTAGATA GAGAAAACAA GGTCGGTGTA 
    ATATATCTTC TAGATGGAAT CTGGACCGTT GATTGTGAGA GATGCCTTAG 
    ATCTCGGAGG CCAACGGAAT CGTCAATATA TTCAAAAAAA ACAACGG

AT2G34760.1

Model type
Pseudogene
Computational Description
pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}
Link
InterPro Scan - TAIR

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR