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GT16538

CSHL Arabidopsis genetrap mutant lines

Original: GT16538

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16538

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2431928 [Map]; Strand: w
      • AT1G07870.2 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G07870.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16538 - 3-prime edge
    GGTAGAGGTT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGAATAA 
    ACTTATTACT TGATGAATCG GTGGTATGCA GCTTATCTCT ACAATGGCCT
    CTTCATCTCA CTCGACTATT TTCTCCTTCA ATTTCCGATG GGTTGTTTCG
    GATGCAGTAA GAAATCGAGC AAACGATCCG AGACTAACAA AGATACTGTC
    ATAAATAGAA AAATTGTCGG TGGTACTACG AGCGTTGCTA AGAGTGATAA
    GCGAGACGAT CAGACTCAGC CCAGTTCAGG TATCGAGTGA TTTTGACTAA
    TTTCGTTATT CTCTCTTCTC CACAAGCTCT CTTTTGTATT TGTTGAATTT
    TTTTTATCGG ATACTTATGT TTAGGTTTTT CTGTATCTGT TACATTTGGG
    AGAGACATTT AATGGAGATT TTTTGTGATT TTTCCCCGGA GAATTTTGAT
    GCATGTGTAC TATTCACCAT ATAAACGATG TTGGGTTTTT GAAATCGAGC
    TAGGTTTTTT TGGTTTTGTC TCCTCCATGA GGGGACAAAG TGTCAAAATT
    GAGCCTTTGG TATCTTGCCG TGTCTATTTT TGGTTAAGTC ACATGATAAC
    TGGTAATCGA TTTTGTTACT CGTTCCATGT GTTGTAGATT CAACAAAAGT
    CAGTCCATAT AGAGATGTAA ACAATGAAGG AGGAGTTGGT AAGGAAGATC
    AGTTATCTTT GGATGTGAAG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 73638 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron4 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT16538 - 5-prime edge
    CCTACTTTCT CCCTGTTTAT TCCTTTGCTT AAAATGGCAT AATTAAATTT 
    CCCTAATTAA CCATTTTACT CATATAATTA AGGGTCGATA GATGTGACAG
    ATTTGATTTC ATTATATGAT TATAAAAATA AAAATGTTGA CAGAGAGGAG
    ATCCAACGTA TAAAGGCAGG CAACCCTGAT ATCAGCCACA GAGAAGCCTT
    CAGTGCTGCT GCCAAAAACG TACCATTTTC TTTTTATTTC TCTCTTTTAA
    AATAATACTA CTAGTTTTCT ATATTGCATT ATATCCATAA TCATACTATC
    TCATTTTAGC CGTTATCTAT ATGAATTGAA CAATATACAA ATCAATTGAC
    TGAACCTAGC TAGATTATTG TGGAGCTACA TTGATTCTCA CGTTGCTTTA
    AAAAAAAACA TAAAACAAAA TAGTTACCCT AATAATCCAT ATGCTATGAT
    CTTTATATCC AGCATACATT AGCTAGGACT AGTCTCATGA GACTACGATC
    TAGGGTTTCA GTGAAGTTCC CAAGGAGACA TTTTAGTCTG GCTTTGTATT
    CGTATATTTT TGACCAGGTT TTTATGTTAT GTATAAGATA AATACACATT
    AATGTTAAAA GAGCTAAGTA TATGATGTAT GTATGAAACA GTGGGCTCAT
    TTCCCTCACA TACACTTTGG ACTCATGGCT GACCATCCTC CC

AT1G07870.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G28590.1); Has 114203 Blast hits to 112857 proteins in 4234 species: Archae - 113; Bacteria - 13468; Metazoa - 41680; Fungi - 9329; Plants - 32811; Viruses - 406; Other Eukaryotes - 16396 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07870.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G28590.1).
Link
InterPro Scan - TAIR

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR