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GT16547

CSHL Arabidopsis genetrap mutant lines

Original: GT16547

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16547

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 85722 [Map]; Strand: c
      • AT4G00210.1 - [+] show detail - LOB domain-containing protein 31
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16547 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACGC 
    CCTGCGTCAA CATTGTCTCT GAACAATTCA CATGGCAATA GAGTAAAGAT
    CACCGTCCTC ATCCACTGGA TTTTCCAGGC CAAAGAATGT GCTAAGATCC
    ACTGACTCTG TTGGGACCTC AATAGCTTCT TTTGGCTGTT CTTGTTCATC
    TCACTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 85664 [Map]; Strand: c
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: -970; Region: promoter
    Flanking Genome Sequence: GT16547 - 5-prime edge
    CCTACTTTCT CTCTGTCGAC ACCGACCATC TTCTTTAATA TAACCATGTT 
    AACCTTTGCG ACATTTATTA GGAACTCTTT ATTTTGTACT AACTGGATTG
    CCCTGTAACT TAAAAGGGGC GTTAATAGAT TCTATTGGAT TTGCAGTGCA
    AACTCACATC TCACATCTCG CGCTTGACGT CGACATGACA CCCATGTCCC
    TCTATTTTAT TATAAGGCTT TGCTCCATTT TGTTGGGTTC CAATAATCAA
    AATGTTAAAT GTGTAATTCA TAGGTAATAC AGGCCCAAAA GGTTAAGGCC
    CAAAAGCCTC AAATGGGCTT ATGTTAAAAT CTTGCCTTTT GCATCCAAAC
    CCACTTGCCT TTTCTTCAAG TGTGACTAAA AACATTATGT AATAAAGCTA
    ACGTTAATCA CTTGTCTTGG AAATATACAG GGGTGATTAA TATATAATAG
    TGGTGAAGGT GGTCTCGAGG CCTCGAAATT TTAATTTGAA CTCAAGGAAA
    GATGTGTTGA CACGTAATGA ATGATCCAAA AGCTTTCTCA TGTGCCGTGA
    TCCTAATTGA GATACGGATA AATTCTTATT TAACACACAA TGATTTAAAA
    TCACAAATGC TCTAT

AT4G00200.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00210.1

Model type
Protein coding
Short Description
LOB domain-containing protein 31
Computational Description
LOB domain-containing protein 31 (LBD31); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 19 (TAIR:AT2G45410.1); Has 416 Blast hits to 414 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR