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GT16548

CSHL Arabidopsis genetrap mutant lines

Original: GT16548

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16548

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9122637 [Map]; Strand: w
      • AT2G21310.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 2; Position: 9125976 [Map]; Strand: w
      • AT2G21320.1 - [+] show detail - B-box zinc finger family protein
        Distance: -287; Region: promoter
    Flanking Genome Sequence: GT16548 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCACG TATGTATATT 
    AAATGATGGA ATACGTGAGT GTAAAGTACA GTAGTTCTAA TAGTATTTAT 
    CAGTGACTGA TTACATCAAT TTTAATTCTA ATAGTATTTG CTAGACCTCG 
    CCTGGACCGG TCAATGTTTC TACTTACTGC GCTCATCAAA CGGTTACCAT 
    TTGAATCTAG ACATGTTGTT GATGTAAAAA ACTTGAATCT TTAACTGTTT 
    TATGCGGAAG CTCTCACTAA ATCTCTCTTT GTTCCATCAC TCGAGTGTTT 
    AGACAACGAA AGTAAAACAG ACACAAGCAA ATGTTAACCC AGTTCACGTT 
    CAGAGATGAA CGCTACGTCT GGACCGAGAT TACCCGGAAA TCCACTACAA 
    AGCCTTGGTT ACACAAACCC TTAGAAACAA GACTGAATAA ACTATCAGCT 
    GCCTCTCTTG CACTTACTCT CTTAACCCTA ATGACTCACT TATCTTCTCC 
    TTTATACAAC TCTACTCACC GCCACGCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55932 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2483; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1267; Region: intergenic
    Flanking Genome Sequence: GT16548 - 5-prime edge 
    TGTGAAGTAT TTCTTCACAA TTTATTTTTG AAAATAGCTT TTAACCCATA 
    GCAAATGCCT ATGTTGCCAT GGGGTAGACG GGACTGATCA CACATCGAAG 
    CATACTCTTG ATAATATATG GACAGGGAAA TACATATTAG AAAGCTATCA 
    AACTTTCTCT TCCTTTTTTT TTGTTTGCTG GGTTTCATCT CACTCGA

AT2G21310.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G21320.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Computational Description
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G38960.1); Has 1943 Blast hits to 1369 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR