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GT16574

CSHL Arabidopsis genetrap mutant lines

Original: GT16574

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16574

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 187030 [Map]; Strand: w
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron1 (CDS)
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT16574 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    TATAAAGCAG GAAACTTTGG GTTCTTTTGA TGCTTGGGCT TATCTAGATC 
    TGTATGTTAC ACCAATTTTA CTGTTGATTT CTCAGATAAA AGCTCACATC 
    TTTCTGTAAC ATGTGTTTGT GTTTGTGTGT TTTTAGGTGG ACACATCAAC 
    CCTGCTGTAA CATTCGGTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 187087 [Map]; Strand: w
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron1 (CDS)
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT16574 - 5-prime edge 
    CTTTCTCCCT GTTTATAACT GTTTTTGGTT CCTTTACATT TTCTAGGTCA 
    AACAGAGCAT GAACAAAAAC AGAGGACTCA CATAATGGTT TTCAGAAACA 
    AAACAGAGCA AATAAAGCAG AACCAAAACA GAGAACCCAC CAAAACAGAG 
    ATTACAGAAA AATGGGAAAA TCGAGAGAAG GTTACCTGAA ATTCCAGCAG 
    TACAGTAGAC AAGAGCAAAG ATCATGCCAC CAAAAGCCCA AGCGATACCT 
    TGGATTCCAA CAGAAGCACA CATGTTTGGT GCTCTCTTAA CTCCCATTAC 
    AGTCAAAACA GTGATGTAGA GAAACAAGAA AGTAGCGATA AACTCAGCTA 
    TTCCGGCTCT GTAGAAAGAC CATGAGCTGA GCTCGCCGGG CTCGAACAGT 
    GGCGCAGGAG GTGGCTCTTT GTAGTCCTTG TCGGTGGACT GAGCCGATGT 
    ACCGATGGGT TGCCTCTCCG GGAACTTGTT AGCTCCCACT CGTACATCTT 
    CTTCTTTGCC TTCCATTTCT CTCCCTCTCC CTCT

AT4G00430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR