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GT16580

CSHL Arabidopsis genetrap mutant lines

Original: GT16580

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16580

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 183210 [Map]; Strand: c
      • AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
        Distance: 0; Region: intron2 (5UTR)
      • AT4G00420.2 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
        Distance: 0; Region: intron2 (5UTR)
      • AT4G00420.3 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: GT16580 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    ATAAATGCAG AGTGACAGAA AGAACAGAGG CTATTGCAAT GAAGGGACCA 
    CAGACGAAAA TAAAAAGGAG AGACAGTTAT CTAGGAGCTC ACAGTTATGG 
    CGAGAAGCTG AGCTTTTGGA TTCCTGCTAC CAATCCGTTT TTTAAATGCC 
    TTTCACAACA TCTTTTGGTT GCCTGCCAAA CAGCTACCGC TTTCAGACAC 
    CTCATACGAT CGTCCAATTA GTATAAACAC TGAAATATCC TTCTTCCAAT 
    CGCGAAGAAT AAATATTTCC CAACTGCTAC AATACAGCCC TATGAAAGAT 
    GACTAACTTG AGCAAAACAG GATGCCACAA GTATTCGAAT AGGTCCTAGA 
    AAACATGGAA ATATCTAACT ATGGTAAAGA GACGAAAATT GATTATCTCA 
    ACTAGCTGAA CTATCTTAAC TATCAGATAG CTTTCCTCTC CTTATCTAAA 
    ACCCTTTGAT TAGATTACAG AAACAACACT TCAGTTCCTA AACAACAGTA 
    GACAAATATC TTCTTTGCCT AAACCACAAG ACAGACCCCT ATATTTAGTA 
    GTTAAACAGC ATTTTGCTAA CCTCGCAAGA CAATTCAAAT CACACACACA 
    AG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15640957 [Map]; Strand: c
      • AT5G39070.1 - [+] show detail - transposable element gene
        Distance: -168; Region: promoter
      • AT5G39080.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: -701; Region: promoter
    Flanking Genome Sequence: GT16580 - 5-prime edge 
    ACGATGGGTA AAAGTCCAGT GGATACCCGA AACTTGCTTA AAATTTCAAG 
    CCCAAAAATT CATGTTTTGT GTTAAAATTA AAGTAGGCTT AAAACGGGCG 
    GGTTTTATTT ACGTAGGGTT TTATGTAGAT TTTACTGTTG GGTTTTTTTT 
    TTCCCCGAAG GTTTTTTTTT GGTTAAAAAC CCACCCCACC CCAGGTTTTT 
    TTCCCACCCC ATTTTCCCCG GGGTTTCCAA AACAAAAAAC CCCCCCAAAA 
    AAATTATCCC AAAACCAACC CTTTTAACCA GGGAAGGTAG CCCAAACCAA 
    AATTCCCCCC TGGCCCCCCC CCAAAAAAAA TAATGGGGAA AAAGGCCCCT 
    TTTTATTTCC CCACCCTCCC CCCCAAAAAA TCCACCTCCG AAGAAATTTT 
    GAACCCCCCC CGAAAAAAAA AGTCCAAACC AACCAAACCT CCTTTTTCCC 
    CCC

AT4G00420.1

Model type
Protein coding
Short Description
Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description
Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00420.2

Model type
Protein coding
Short Description
Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description
Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 72 Blast hits to 72 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00420.3

Model type
Protein coding
Short Description
Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description
Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G39070.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 3.9e-50 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G39080.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G39050.1); Has 2008 Blast hits to 1990 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 42; Plants - 1965; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR