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GT16581

CSHL Arabidopsis genetrap mutant lines

Original: GT16581

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16581

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19559743 [Map]; Strand: w
      • AT2G47720.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 2604; Region: intergenic
      • AT2G47740.1 - [+] show detail - pre-tRNA
        Distance: 112; Region: intergenic
    Flanking Genome Sequence: GT16581 - 5-prime edge
    GCCCTTAAGA AAACCAGAGC ACCAATGAGC TGAGAGTTTG GGAGATCTCT 
    TGCGATGAGG ATCATGACTC AGTACATTCC TAAACTATTC TCGTATCCAC
    TGAGTTACTC GTACAAATCC ATAAATGACC ATACAAAGTA GCCTCTCGTG
    TGAAAATAGT GATAACAATT AAAAATGAAA AAATGCGCAT CCAGGGAATC
    GAACCCTGGT CAGTACCGTG GGAGGGTACT ATGATACCAC TACACCAGAT
    GCGCTTTTTA TTATGCTGAC AAGTTTTTAT TATTAACTCT AACATTTGTT
    CTGCCGGGAA AGTTTCCTGA TGATAGTAAG AAACAGAGCA ACTCGAAAGA
    GAAGACAATG GCGCGAGGAG GATTTGAAGA TAACGAAACC AGAGAAAGCC
    TGCACTGAAG TTAGAAAACG GTGAAGGAAG AAGAAGAAAC AGAGTAGAGG
    AAGTGGCAAC GCCGTAGCGG TGAAGCAACG ACGTCCGTCT TAAGTCGATA
    AAATTTCTTA TAAATATGTT TTATGGAAAT TTGGAAAACT AACCTTAAAA
    AAAAC

AT2G47720.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47740.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: CCC)
Link
InterPro Scan - TAIR