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GT16583

CSHL Arabidopsis genetrap mutant lines

Original: GT16583

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16583

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4739189 [Map]; Strand: c
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: -53; Region: promoter
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: -48; Region: promoter
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: -53; Region: promoter
    Flanking Genome Sequence: GT16583 - 5-prime edge 
    ACTTTCTCCA TGACAATCAC CTTAAAGGCT TAAACACATA ACAGCCATTA 
    CGAGTCACAG GTAAGGGTAT AATAGTAAAG AATCAATCTA TATAATATAC 
    GACCCACCCT TTCTCATTCT TTCTGGAGAG TAACATCGAG ACAAAGAAGA 
    AAAACTAAAA AAGAGAACCC CAAAGAATCG AATATTTATT ATTTCGCCCC 
    GAAGATTCTA TTTCTGATCA TTTACACCCC TAAAAAGAGT AGAGCTTTCG 
    TGAAGCCACC ATGTGTGGAG GAGCTATAAT CTCCGATTTC ATACCTCCGC 
    CGAGGTCCCT CCGCGTCACT AACGAGTTTA TCTGGCCGGA TCTGAAAAAC 
    AAAGTGAAAG CTTCAAAGAA GAGATTGAAT AAGCGATCCG ATTTCTTCGA 
    TCTTGACGAT GATTTCGAAG CTGATTTCCA AGGGTTTAAG GATGACTCGG 
    CTTTTGACTG CGAAGACGAT GATGATGTCT TCGTCAATGT TAAGCCTTTC 
    GTCTTCACCG CAACTACTAA GCCCGTAGCT TCCGCTTTCG TCTCCACTGG 
    TATATATTTG GGTTTGATTC GAATCTCAAC TTTTATTTGA ATTGGAAAGC 
    TCATGAAATT TTTAGATCTT TAGGTTTTCA GAGGCTTTTC TTAGTTTATA 
    GCTTAGTCTT TGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4739188 [Map]; Strand: c
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: -52; Region: promoter
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: -47; Region: promoter
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: -52; Region: promoter
    Flanking Genome Sequence: GT16583 - 5-prime edge 
    CTTTCTCCAT GACAATCACC TTAAAGGCTT AAACACATAA CAGCCATTAC 
    GAGTCACAGG TAAGGGTATA ATAGTAAAGA ATCAATCTAT ATAATATACG 
    ACCCACCCTT TCTCATTCTT TCTGGAGAGT AACATCGAGA CAAAGAAGAA 
    AAACTAAAAA AGAGAACCCC AAAGAATCGA ATATTTATTA TTTCGCCCCG 
    AAGATTCTAT TTCTGATCAT TTACACCCCT AAAAAGAGTA GAGCTTTCGT 
    GAAGCCACCA TGTGTGGAGG AGCTATAATC TCCGATTTCA TACCTCCGCC 
    GAGGTCCCTC CGCGTCACTA ACGAGTTTAT CTGGCCGGAT CTGAAAAACA 
    AAGTGAAAGC TTCAAAGAAG AGATTGAATA AGCGATCCGA TTTCTTCGAT 
    CTTGACGATG ATTTCGAAGC TGATTTCCAA GGGTTTAAGG ATGACTCGGC 
    TTTTGACTGC GAAGACGATG ATGATGTCTT CGTCAATGTT AAGCCTTTCG 
    TCTTCACCGC AACTACTAAG CCCGTAGCTT CCGCTTTCGT CTCCACTGGT 
    ATATATTTGG GTTTGATTCG AATCTCAACT TTTATTTGAA TTGGAAAGCT 
    CATGAAATTT TTAGATCTTT AGGTTTTCAG AGGCTTTTCT TAGTTTATAG 
    CTTAGTCTTT GGA

AT3G14230.1

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6244 Blast hits to 5852 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.2

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5845 proteins in 257 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6193; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.3

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5847 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR