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GT16627

CSHL Arabidopsis genetrap mutant lines

Original: GT16627

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16627

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3511950 [Map]; Strand: w
      • AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16627 - 3-prime edge 
    GGTAGAGGAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCACTC 
    GTCTGGTCTA GGACCTCATG TACCACTTAC TGAATATGTT GATAACATGA 
    AGAAGATCGC TCTTCATCTT CAGGTTTATA CTTCCTTTAT AATTGTTAGA 
    TTTATTATTT ATCTCCTGTC AGTCACGTTT AAAAGCCATT TCAAGTGCTA 
    ATTTCTTCCT TTATTTTCTG TTTCAGAGCC TTTCAGACTC CACCCGAATC 
    ATATTTCTTA GTTCTCCTCC AGTGGATGAG GCTAAAGTTC GCCAGAACCA 
    AAGGTAACTT CCCTGAATTT CTTCACTATC TCTCTGTTTC TCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3511952 [Map]; Strand: w
      • AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16627 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTCAC 
    TCGTCTGGTC TAGGACCTCA TGTACCACTT ACTGAATATG TTGATAACAT 
    GAAGAAGATC GCTCTTCATC TTCAGGTTTA TACTTCCTTT ATAATTGTTA 
    GATTTATTAT TTATCTCCTG TCAGTCACGT TTAAAAGCCA TTTCAAGTGC 
    TAATTTCTTC CTTTATTTTC TGTTTCAGAG CCTTTCAGAC TCCACCCGAA 
    TCATATTTCT TAGTTCTCCT CCAGTGGATG AGGCTAAAGT TCGCCAGAAC 
    CAAAGGTAAC TTCCCTGAAT TTCTTCACTA TCTCTCTGTT TCTCCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3512030 [Map]; Strand: w
      • AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT16627 - 5-prime edge 
    GGCGCCATTG AGTCGTTTCC TCCAAAATAG ACAATGACCA GAGAAGGTTG 
    TACTGCAGCA TCCTGCATCC GTAACAAGTT GCAATTTTTA GGCGACAAAG 
    TGGAAGAAAA CAGAAGCTTT GAAATATGAT GGTTTTCTAC AAAGTTAAGC 
    TCATTCTACC AAATTTTTTT TATAATGGGT AAGAGAAAAC AGCTTGAGAT 
    ATCAAGAAAA CTCGGATGAA ACAGATTATG CTTAAACAGA GACATCTCCC 
    TTGAAACAGA TGCAGAGTCT TGTATGCTAA ATCAAAGACT ATGCAACTAA 
    AATAGCCACT TGTGTAATCC TTTTGGGGTA CATTTTGAAC TAGTAAAATA 
    ATGTTCACAA AGAATTCTTA CTAGGTCAAA TGATAAGCAC ACATCAACCT 
    ATACGGACTA ATATAAAAAG ACCTATAAAA CGCTGAATCT TTATCATAAT 
    CTAGTATTGA AGAAACTAAT AGTCTAAAGA GAGAAGAAGC AAGAAAAAAA 
    AGGGAGTTGA AAGAGTACCT TGGGGAACAC TTGGTCGACA ACTTCCAAAG 
    CACGAGAAGA GTTCCATCCA TAATATCCTC GCAGAATGAT GTCGGCCTAT 
    ACACATAACA TCCAAATGGA GAAATAACAT TATGG

AT3G11210.1

Model type
Protein coding
Short Description
SGNH hydrolase-type esterase superfamily protein
Computational Description
SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR