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GT16639

CSHL Arabidopsis genetrap mutant lines

Original: GT16639

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16639

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9101453 [Map]; Strand: w
      • AT3G24900.1 - [+] show detail - receptor like protein 39
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16639 - 3-prime edge 
    TCCACCATCT TCAATCCCTT CCGAGTTTGG AGTGCTCAAC AAATTAGAGG 
    TTTTGTTTAT GTCTACTGGT GGCTTCCTAG GCCAAGTTCC TTCCTCTTTT 
    AGTAACCTAA GCATGCTTTC CGCTTTACTC CTCCACCATA ACGAGCTCAC 
    TGGTAGTTTA TCGTTTGTGC GGAGTTTACG CAAGCTCACA ATTTTAGATG 
    TTTCTCATAA TCACTTTTCT GGAACTCTTA ATCCCAACAG TAGCCTCTTT 
    GAGTTGCACA ACCTCGCTTA CCTTGATCTC GGTTTCAACA ACTTCACCTC 
    CTCTACACTC CCGTATGAAT TTGGCAATCT CAACAAACTA CANGGCCTTG 
    TTTCTTACCT CTAATAGCTT CTATGGTCAA GTTCCTCCCA CAATTAGTAA 
    CCTAACCCAG T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9101445 [Map]; Strand: w
      • AT3G24900.1 - [+] show detail - receptor like protein 39
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16639 - 3-prime edge 
    CTTCAATCCC TTCCGAGTTT GGAGTGCTCA ACAAATTAGA GGTTTTGTTT 
    ATGTCTACTG GTGGCTTCCT AGGCCAAGTT CCTTCCTCTT TTAGTAACCT 
    AAGCATGCTT TCCGCTTTAC TCCTCCACCA TAACGAGCTC ACTGGTAGTT 
    TATCGTTTGT GCGGAGTTTA CGCAAGCTCA CAATTTTAGA TGTTTCTCAT 
    AATCACTTTT CTGGAACTCT TAATCCCAAC AGTAGCCTCT TTGAGTTGCA 
    CAACCTCGCT TACCTTGATC TCGGTTTCAA CAACTTCACC TCCTCTACAC 
    TCCCGTATGA ATTTGGCAAT CTCAACAAAC TACAGGCCTT GTTTCTTACC 
    TCTAATAGCT TCTATGGTCA AGTTCCTCCC ACAATTAGTA ACCTAACCCA 
    GTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19559714 [Map]; Strand: w
      • AT2G47720.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 2575; Region: intergenic
      • AT2G47740.1 - [+] show detail - pre-tRNA
        Distance: 141; Region: intergenic
    Flanking Genome Sequence: GT16639 - 5-prime edge 
    TTCCATCCTA CTTTCTCTCA CTCGACTATG CCCTTAAGAA AACAGAGCAC 
    CAATGAGCTG AGAGTTTGGG AGATCTCTTG CGATGAGGAT CATGACTCAG 
    TACATTCCTA AACTATTCTC GTATCCACTG AGTTACTCGT ACAAATCCAT 
    AAATGACCAT ACAAAGTAGC CTCTCGTGTG AAAATAGTGA TAACAATTAA 
    AAATGAAAAA ATGCGCATCC AAGGAATCGA ACCCTGGTCA GTACCGTGGG 
    AGGGTACTAT GATACCACTA CACCAGATGC GCTTTTTATT ATGCTGACAA 
    GTTTTTTATT ATTAACTCTA ACATTTGTTC TGCCGGGAAA GTTTCCTGAT 
    GATAGTAAGA AACAGAGCAA CTCGAAAGAG AAGACAATGG CGCGAGGAGG 
    ATTTGAAGAT AACGAAACCA GAGAAAGCCT GCACTGAAGT TAGAAAACGG 
    TGAAGGAAGA AGAAGAAACA GAGTAGAGGA AGTGGTAACG CCGTAGCGGT 
    GAAGCAACGA CGTCCGTCTT AAGTCGATAA AATTTCTTAT AAATATGTTT 
    TATGGAAATT TGGAAAACTA ACCTTAAAAA AAACTATAAT TAAGAAAGTA 
    ACACTAACAA AAAAATGAGA TGATATTTTT TATATTTTAT ATATTAATCA 
    CAACTTTACC CTCCTTCCTT CTCTCTCTCA TTCTCCGCTT GGCTCCCCAC 
    TTCTTTTTTT TCTCTCTCCT TCTCAACCTC TCTCCTTCTC TCCCTTTCTC

AT2G47720.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47740.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: CCC)
Link
InterPro Scan - TAIR

AT3G24900.1

Model type
Protein coding
Short Description
receptor like protein 39
Computational Description
receptor like protein 39 (RLP39); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 41 (TAIR:AT3G25010.1); Has 100467 Blast hits to 28160 proteins in 1059 species: Archae - 45; Bacteria - 6030; Metazoa - 21147; Fungi - 1159; Plants - 64382; Viruses - 14; Other Eukaryotes - 7690 (source: NCBI BLink).
Link
InterPro Scan - TAIR