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GT16671

CSHL Arabidopsis genetrap mutant lines

Original: GT16671

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16671

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 117452 [Map]; Strand: w
      • AT2G01190.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: 0; Region: exon2 (3UTR)
      • AT2G01200.1 - [+] show detail - indole-3-acetic acid inducible 32
        Distance: -565; Region: promoter
      • AT2G01200.2 - [+] show detail - indole-3-acetic acid inducible 32
        Distance: -566; Region: promoter
    Flanking Genome Sequence: GT16671 - 3-prime edge 
    AACGGTAGAG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAACCA 
    AACTTAACAT GACACCAGAC TCTTTTTTTT GATGCAGCAA CTTGTAAAAG 
    AAGAGAAGAA AAAAGAAGTA AAAATTATAT ATTTATACGT TTAAAAACCA 
    ACCCGGGGTT TTCTTCCTCC AAAATTTTGT GGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 117457 [Map]; Strand: w
      • AT2G01190.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: 0; Region: exon2 (3UTR)
      • AT2G01200.1 - [+] show detail - indole-3-acetic acid inducible 32
        Distance: -560; Region: promoter
      • AT2G01200.2 - [+] show detail - indole-3-acetic acid inducible 32
        Distance: -561; Region: promoter
    Flanking Genome Sequence: GT16671 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AACCAAACTT AACATGACAC CAGACTCTTT TTTTTGATGC AGCAACTTGT 
    AAAAGAAGAG AAGAAAAAAG AAGTAAAAAT TATATATTTA TACGTTTAAA 
    AACCAACCCG GGGTTTTCTT CCTCCAAAAT TTTGTGGTTC ATCTCACTCG 
    ACA

AT2G01190.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01200.1

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 32
Curator Summary
Belongs to auxin inducible gene family.
Computational Description
indole-3-acetic acid inducible 32 (IAA32); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 34 (TAIR:AT1G15050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01200.2

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 32
Curator Summary
Belongs to auxin inducible gene family.
Computational Description
indole-3-acetic acid inducible 32 (IAA32); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 34 (TAIR:AT1G15050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR