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GT16681

CSHL Arabidopsis genetrap mutant lines

Original: GT16681

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16681

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19381380 [Map]; Strand: c
      • AT5G47850.1 - [+] show detail - CRINKLY4 related 4
        Distance: -298; Region: promoter
      • AT5G47860.1 - [+] show detail - Protein of unknown function (DUF1350)
        Distance: -139; Region: promoter
    Flanking Genome Sequence: GT16681 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGGAACCGA CCGTTTTCAT CCCTAATAAT 
    AGGGATTGTA CAAATCCTTC ATGAGAGGAT GACACTCTTC GTCATTTAAT 
    GAAAGCAAAT GTGGCCCATT AAGTATAATT GAAGCCCAAT CACCTTTTAC 
    ACAATTAACA ATTAAGTATT TGGTCTCATC ACAATGTTTG CGTTAGCTGC 
    GAAACAAGAT GCTGTTACAG TCATAGAAGT CTTATGCGTA CACGACTCCG 
    ATTTCAAAAT CTGAACGGAA TATAAACTCT CGACGACGAA AATCTCAAAA 
    TACCCAAAAT CTCCTCCGAC TCCGAGCTAT GGCTACGTGT TCCATCTTCG 
    CCCGCCCAGT CTTTCTCTCC CCGCCGGCGA TTCTGTAGCT TTTCTCACAA 
    TCGCCGGTCT CTACCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10485993 [Map]; Strand: w
      • AT5G28510.1 - [+] show detail - beta glucosidase 24
        Distance: -1971; Region: intergenic
      • AT5G28515.1 - [+] show detail - transposable element gene
        Distance: -6001; Region: intergenic
    Flanking Genome Sequence: GT16681 - 5-prime edge 
    TGCATGTAAG TCGAATTTAC CTCGCCAATT TTTAACTTGA ACTTTGTTCA 
    TAACATAAAC CAAGTTTTTA TTGCAAGTGT TTAAATCTGA ACTCATCCAA 
    CAACACATTT ATGATAATAT TAGTTCTCCG AGAAAATCAA TATTCTCAAA 
    GAATTGTAGG GGATACTTGT TGTTGATCGC AATCTTTTAT CTTGTGAATC 
    AAATCTAGCG GAAATTTACA TTCACATTAG AATTGAATTA ATTGAGCTAC 
    CCGTTTATTG CTAAATGGGA TCTAAACAAG CCGAAATTGC TTGCGGAAAA 
    TGTCCATATA TATTAATGAT TTTGATTTTT CATTTTAAAA TTTTTTAAAA 
    GTTCACCCCT AAATAGAATT AGGTTGCTTT TTTTTCTTTC TTATGAACGA 
    CAAGTAGATA AACCTTTATA GGCTTGAGGC TTTAAACCCA TTTTTGAATT 
    AAGCGGTACG TGTCAATTAT GTGTGGTGTG ATACATTACT TACCTACTGT 
    TGTCTCTTTC GTGTTTGTGT TTCCAATATG AATCAAAGTA TAATTGTTTA 
    GCAAACTTAT TTTTGTATTT AGGATGATTC ATGCACTATA TGATTTA

AT5G28510.1

Model type
Protein coding
Short Description
beta glucosidase 24
Computational Description
beta glucosidase 24 (BGLU24); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G09260.1); Has 11366 Blast hits to 11018 proteins in 1472 species: Archae - 140; Bacteria - 7863; Metazoa - 718; Fungi - 202; Plants - 1442; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G47850.1

Model type
Protein coding
Short Description
CRINKLY4 related 4
Computational Description
CRINKLY4 related 4 (CCR4); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 3 (TAIR:AT3G55950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G47860.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1350)
Computational Description
Protein of unknown function (DUF1350); LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT3G43540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR