Home
Mutant Lines
GT16683

GT16683

CSHL Arabidopsis genetrap mutant lines

Original: GT16683

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16683

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 76402 [Map]; Strand: c
- AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: -1018; Region: intergenic
- AT4G00190.1 - [+] show detail - pectin methylesterase 38
  Distance: 4031; Region: intergenic

AAACGGTAGA GGTATTTTAC CGACCGGTAC CGACCGGTTT CATCCCTAAT 
TGAGGTCATC GTACAAGTCT TCTCCGCAAA ATAAGAAGAA GAAGATAATG 
TAAAATAAAC GAAGTTAAAT CTAATGTGGT TACGGTTTGA ATTCAATTGG 
ATGAAAAATA TTTTTTCTTT TCTTTTCTTT AAAGGACGCA AAGTTCGATG 
AAGTGGGAGA GAGAGGAAGA GGAAAGGGAC TTGTGCATGG AAGTGATTAA 
GCAAAGGCTC ATTCATCAGT TGTTTTCACA CTTAATAACA TTTCTGCCAC 
ACCACACTTT CCCTCGATCC TCGTCAATTC CATGCCCTTT TCTATTTATT 
AGTATTTGTA TATACTTTCT CTACATTCCA ATGTATATCA TTTTGTCATC 
ATTATTTTTA CCCGCAAGTG TGTGGTTTCG CTAAATTCCA TAATACAGGA 
CCACCATTTT GTGGTAACTT CCCAATTGTT CGTGATAATT ACTAGGTCAT 
AGTGAAATTT AAATTTATTT ATATCTGAAA TTAGTTTAAG TTTTTGTAAA 
TATTATGGCT ATCCGGTTTC ACAATATATA GTGTAGACAT AGAATATGAT 
TTTTGTAAGT CAAAATCCTA TCACAATAGA ACTTTAAGCA AATATAGTAT 
AGTTGTTTGC AACTTTAGTA TTTGTATTGA GTTTATTAGA GTGTGGGCTT 
CCAACCTAAA ACTAAATGGC AAT

5 prime edge [+] show sequence

Chromosome: 4; Position: 76344 [Map]; Strand: c
- AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: -960; Region: promoter
- AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: -960; Region: promoter

CTTTATCCCT GACCTCATAC GCTGAAGAGT TGGATTCACT GCGAGTGTAT 
ATGTGCATGT AGAAACAAAA TATCTAGCTA TATGACCACT TTTAACTCTA 
AATATGGGTG TAATATGCCA AGGACTTTCT GGAGATCCAC CACAACAACA 
TTCAAGTTCA AGTTCTGCTG CTTTTACGTC TATGAAAACA ACACCAACCT 
TATTTTCATA TTGTTCTCTC TTTATCTCAT GCATAAGTAT ATTTTCATAT 
TGTTCCCTCT TTATTTTCAT GCTTTTAGTT GATATTTTTT TTGTTATTGT 
ATTATCATTA GTGCGACGAC ACAAAGTCAC AAACCATGTA ACAAAATGCT 
TAACCAAAAT AGAAAACCTT AACAATTCCA ATATATTTTT CTGTTATTGC 
ATTATCAATT ATCATCAAAA AAAATTTCCA CTGTTGCATT ATCATCATTG 
CGACGACACA AGGTCACAAA CCATGTAACA AAATGCATAA CCAAAATAGA 
AAACCTTAAC AATTCCAAAT TTAACATGTG AATTAATATT ATCTTAATTT 
TTGGATGTTA GAAATTCAAA TAAACTCCTA AACCCTGTTG ATATAGTTAA 
ACTTCTATAC ATGTGTCACG ACACTTATTA GCCAAATTGA AGTTTTGTTT 
TTTCCGCAAA TATATAAGCG GTTTAAATAG TTGATAAAAA ATAAATAAAG 
TTAGCATGTT TGTCGTATGT ACATGTTTGA TGCTGCACAA ATCTTGTCGT 
TATAAAACTT TGAAATCTTT ATATCTATTA TTCCTCACCG ATCGGCTACT 
AATTCAATGG TACTTGATAA TGATAATTAG TCCCAAAGTA GAATTTTTAT 
CTG

AT4G00180.1

Model type: Protein coding
Short Description: Plant-specific transcription factor YABBY family protein
Curator Summary: YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description: YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00180.2

Model type: Protein coding
Short Description: Plant-specific transcription factor YABBY family protein
Curator Summary: YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description: YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00190.1

Model type: Protein coding
Short Description: pectin methylesterase 38
Computational Description: pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link: InterPro Scan - TAIR