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GT16696

CSHL Arabidopsis genetrap mutant lines

Original: GT16696

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16696

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5789273 [Map]; Strand: c
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: -24; Region: promoter
      • AT1G16930.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -714; Region: promoter
    Flanking Genome Sequence: GT16696 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAAT 
    TGGTGTATGT GTTAAAGTGA CGGCTTGTGA CAAGACAGTC TGTGACTGTA 
    ATCGAGATCT GGTCCGTTGA TCTATTGGGC GCGTGTGTGA CTGTTGTTAT 
    ATCAAAAGGT TTTTACTTTT TACAGGTTTT CGCTGTATTA GCAGGGTGAA 
    GACTAAAAAT TTGATCATTA AATCACCATA AGATCACTAG ATTAGTTAGC 
    TCTAATAAAG TGGGAAGTAC AACAATATAA ACACAAACTT TTTCTTGAAG 
    ACGTTTTAAC TTTTAGTAAT AATGTAATTT CTTNCCTCAC AAACTTAACT 
    TCTCTTTGGT TATATTATTA ATTGACTCAC GCCATGACAT ACATTATTTT 
    TCTAGCTAAA ATTTGTAATC AATGTAAATA TTAAAGATAG TAAAAAAAAA 
    CTACGTGATT AATGTCCTGA GTTGACTATT ATTGTCTGCA TCTTAGAGAT 
    GTCAAAGATG TCAACAAGCA AGCGAGACGA TCTATGTTCC CTTTTCCCGG 
    AAAATTGACG GTGCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5789205 [Map]; Strand: c
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: exon1 (5UTR)
      • AT1G16930.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -782; Region: promoter
    Flanking Genome Sequence: GT16696 - 5-prime edge 
    GCACAATTTC ATCTCACTCG ACATATCAAA TCTCAGTTTA CACCTTCACA 
    CTGCTGCGTC TCTCTCTCTC TCTCTCTTTC TTTCTCAGAT TAATCGCTGA 
    GAAGAAGCAA CCACCTGGAG ACGGCGGAGA TGGCAGGGTA CAGAGTGGAA 
    GATGACTACG ATTACCTCTT CAAAGTTGTT CTTATAGGCG ATTCTGGAGT 
    TGGCAAATCC AATCTCCTTT CCAGATTCAC TAAAAACGAG TTCAATCTAG 
    AGTCTAAATC CACCATTGGC GTCGAATTCG CCACTCGTAC CTTAAAAGTC 
    GATGGCAAAG TCGTTAAAGC TCAGATTTGG GACACTGCTG GTCAGGAGAG 
    GTTCGTTTTT CGTCTTCCTC GTCTCT

AT1G16920.1

Model type
Protein coding
Short Description
RAB GTPase homolog A1B
Curator Summary
small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.
Computational Description
RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16930.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G80470.1); Has 2349 Blast hits to 2299 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2347; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR