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GT16700

CSHL Arabidopsis genetrap mutant lines

Original: GT16700

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16700

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2350032 [Map]; Strand: c
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 1241; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -4687; Region: intergenic
    Flanking Genome Sequence: GT16700 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCCATA TATGACAAAT 
    CTTGTGTCAA CACCAAATCA AATGTGTTTT CGATAGGACT TAACTAGTTT 
    TCTCAACAGT TATTTATTTT AGTTTTTGTA TATGCAGATT TTATTTCGCA 
    GCGTTAAAAG TCTTTTTGTT CAAACACTCT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7916798 [Map]; Strand: w
      • AT1G22420.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16700 - 5-prime edge 
    CTTTCTCCGT GGACCGTTCA GAGATTCTGG CAACTGCCAA TATAAAGATT 
    CGTCCGGTGA AGTCACCTGA ACTGGTGGAG GAATGCCCTC GGATAGTAGA 
    TCGGTCATAG AATTGGCCCA ATCTAATGAT CCGGACGGTA AAGTCGTCGG 
    AAGTGGTGGT TGTTGAATGT TCTCCGTTTG TAGATTATCA GGAGACATAA 
    GCCACTCAAA AAAACCGAAC GGTGCACTTG TCGGAACTGG TGGTGGTGTA 
    ATGTTCGCTG GAACTGGTGG TGGTGTAATG TTCGCTGGAA CTGGTGGAGG 
    AGGAATGCTC TCTTGTTGTT GGCACTCATC ACCATTTACG AACAGGGGAG 
    GCAACATAGA CCCATGTAAC TGTTCCTGGT TCATATCGTC TTCCATCACT 
    CGCGCTTCCA CCGAATCTTT CTCTCGAGGA AGAGACGGTG GAGACGGAGG 
    TCGAGTGTTG AGTGATTCAA CCGTTGAGGT GATCATGGGA TCGGTCATAG 
    TCGGGACCGT AGGAAATCGA TAAGGACGTT GTGTAGTAAT ACGAGAGGCA 
    CTTGGTGGGC TATTGTTAAC AACGAATGGC GGAGGACGTA ACATGTCGAA 
    ACGACGACCA CAGGTTGAGC CGGTGAGGCG ATGAACCATC TCCTTAAAAT 
    GGTGTTTGTG GATTTTCAAG ATCACCGGCT CTTTAGCTTT CAATTTTGAT 
    CTCTCAGAGG AAACATTGTT AGTTTGGTTT GGATCAAGAT CCATTGAGAA 
    ACTTTGAGGT AAATTGGTAA TTTTCT

AT1G22420.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 5656 Blast hits to 3947 proteins in 438 species: Archae - 16; Bacteria - 438; Metazoa - 2628; Fungi - 766; Plants - 800; Viruses - 196; Other Eukaryotes - 812 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07360.2

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR