GT1672

CSHL Arabidopsis genetrap mutant lines

Original: GT1672

Phenotypes

Morphological phenotypes

Original description

  • stunted plants
Anatomical entity
/structure development stage		 Phenotypes
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: GT1672

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1746812 [Map]; Strand: w
      • AT5G05810.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -18; Region: promoter
    Flanking Genome Sequence: GT1672 - 3-prime edge 
    GACCGTTTTC ATCCCTAATT GTCTGCGAGT GAGACATTGA GAAAGAGAGA 
    GAGAGTAGAG AAGAGAAGTA TCAGGGAAGA AGAAGACATG GCTTAAAGGC 
    TTCTAGTTGA AAGAGAAGGT CTTTAGACTT AAGAAATGGT TATTTTATTT 
    TCGTATATAT ATTAAGAAGT GCCTGAAAAT AAGGGAGACA CTTTTGTGAG 
    TGTGTGAGAT AGGGAGAGAG GTTTTTATAA AAGGGAAAGA AAACAAAGTG 
    AATGAGGACA AAGAGGATGC ATTAAAAACA TGACTCCCTT CTTTCATCTC 
    TCTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1746827 [Map]; Strand: w
      • AT5G05810.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -3; Region: promoter
    Flanking Genome Sequence: GT1672 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAATTGTCTG CGAGTGAGAC 
    ATTGAGAAAG AGAGAGAGAG TAGAGAAGAG AAGTATCNGG GAAGAAGAAN 
    ACATGGCTTA NNGGCTTCTA GTTGAAAGAG ANGGTCTTTA GACTTAAGAA 
    ATGGTTATTT TATTTTCGTA TATTTATTTT GAAGTGCCTG AAAATNNGGG 
    AGACACTTTT GTGAGTGTGT GAGATAGGGA GAGAGGTTTT TATAAANGGG 
    AAAGAAAACA ANGTGNATGA GGACAAAGAG GATGCATTNN AAACATGACT 
    CCCTTCTTTC ATCTTTCATG CCTTACAAAT TTGATTTTAG GAACTACTAT 
    TGTTACCCAC NTTTTTTATT TCNTTTTAAA TTGAATTCCT TNATGGGAAA 
    TTAATAT

AT5G05810.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
ATL43; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20030.1); Has 8903 Blast hits to 8881 proteins in 285 species: Archae - 0; Bacteria - 2; Metazoa - 2283; Fungi - 641; Plants - 4839; Viruses - 72; Other Eukaryotes - 1066 (source: NCBI BLink).
Link
InterPro Scan - TAIR