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GT16733

CSHL Arabidopsis genetrap mutant lines

Original: GT16733

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16733

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8244366 [Map]; Strand: w
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1009; Region: intergenic
      • AT5G24280.1 - [+] show detail - gamma-irradiation and mitomycin c induced 1
        Distance: 7012; Region: intergenic
    Flanking Genome Sequence: GT16733 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTAA 
    TGGAATTTTG TTCACCAATT TTCTATTTCA AAAGTTTGTT TTTGATCTTG 
    CTGCTATGAT CTTTTTAAAT AATTAGATTT TTTGAACCAT AACGAACATA 
    TTATAAGAAA ATAGCCATGG TAGCAAAACC AAACTTTTAA AATATCACCA 
    ATCCAACAGA CAAAAAGAGA ATACTAGTGG GCAAAAAGTG AAGGAAAATT 
    TATCATTTCA CATCGTAATT TTTTGTTTAA TTGAAAAAGT GCAAATGAAA 
    TGATGGGTCA ACTATAAATA AAATAAAGAT TTTGTAATTG AACTAAGAAA 
    ATAAAACTCT GTGGATCATG ACGAAAGTTA GAAAAGTTAG GCACATGTAG 
    TTTCAGTGTT GTCATGTTTT TTTTTATGTA AGAGTAGGAA GAAGCTCTCT 
    TATAGGACGG GTATGATCAG CTGACAAGTT CCAAACCCTA TAAAAAGTGA 
    TGTACATTGT GGAATCTGGT AGCTTGACGA TGATGAATGT GATATATCTC 
    TTTCATAGTT ACGTTTTCAT GGTAATTGTT AAAATTTTCA TAAACAATCG 
    AGTTCATTTT TATCGGAATC ATAATAATTA CTACAAAAAT GAGCATACGT 
    ATAAATGTAA TTATCAATCA TCTGTAAGAA AATTTGTATT AGTTAGTTTA 
    AGAAATATAT TAGCGACTTT TTTTTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8244422 [Map]; Strand: w
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1065; Region: intergenic
      • AT5G24280.1 - [+] show detail - gamma-irradiation and mitomycin c induced 1
        Distance: 6956; Region: intergenic
    Flanking Genome Sequence: GT16733 - 5-prime edge 
    CCTACTTTCT CCCTGCCATT AACCGAAAAA GAAAAAGAAA TTTCAGAACA 
    AAAGTGACTA ATCCAAAAAC ACAAAAACCA AACCGATAAC CAACAGGTAA 
    ACAAACTGTT TGAATCGTTT TAGGTCCAGT TTTACTCTCA TTACTCTAAA 
    GACTGAGACT GGATTAGCTC TAATGAGTTT GTGACATTGT GATATTTTTC 
    ATTTGTTTTC TTCATTTTCT TGTCTACCTT ACGCATTGAA CACTTCTCCT 
    CCTCTATCTT CTTCGCTGCC ATTCTCACTC TATCTCTTGC TGCTTCCATT 
    TTTCTCAGCT TCACTTCTTC ATCCTCCTTT AGTGTAATCG GGAAATGAAA 
    TTCCGGTATG CTGATCCAAA AACCATAAAT CATATCATCA GCAGTAAATA 
    CAGATGCAAG GAATATTACA GTTTAAATTC AAGAACTAAA ACGGATACAA 
    GGATCAAGAA AAGGTCAAGT ACCTGCACCC GGAATATATG AATCCGTTAT 
    CTTTTGCGAT AAAACCATCT AAAGAGACTG CACCACCACC ATTGATGTGT 
    GGAAGAGCTG CTTTAACTTG CTTTTGGGTC TCATATACCT GTAAATTCCC 
    AAAGAGATTA TAGAACAAAG TCTCTCTAAG CCCGTATCCT GAGTAAGTTT 
    GAACAGTGAG CTCCTCTGGA GCCAAATCAA TCATGTTCAC GGCATAGCCC 
    TTGAAACCCG GTATGGGATC TCCATCGGGC AGCTTTGGGT CATCCATGGC 
    TAATTTCTTC TGAGGATCGT TCTCCAAAAG TCATCCT

AT5G24270.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Curator Summary
encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
Computational Description
SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
Link
InterPro Scan - TAIR

AT5G24280.1

Model type
Protein coding
Short Description
gamma-irradiation and mitomycin c induced 1
Computational Description
GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 (GMI1); BEST Arabidopsis thaliana protein match is: defective in meristem silencing 3 (TAIR:AT3G49250.1); Has 114 Blast hits to 102 proteins in 24 species: Archae - 0; Bacteria - 7; Metazoa - 8; Fungi - 4; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR