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GT16740

CSHL Arabidopsis genetrap mutant lines

Original: GT16740

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16740

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14327419 [Map]; Strand: w
      • AT4G29080.1 - [+] show detail - phytochrome-associated protein 2
        Distance: -2091; Region: intergenic
      • AT4G29090.1 - [+] show detail - Ribonuclease H-like superfamily protein
        Distance: -6109; Region: intergenic
    Flanking Genome Sequence: GT16740 - 3-prime edge 
    TAACGCTGTA AGTACGGCCG TCCACTGATT TAACATTTTA GGTTTAGTGT 
    AATTCCATTC GATCCTCAAC TAACTACATA GTTTTCAATT ATAGCCATAA 
    TTATTATGCT TGATGAAAAG CAGAAAAAAA TGAAAAAAAA TTAAGTATAA 
    CATCAGTACT AAAAATAAAT AAAATTATAG TATGTATTTG TCCCTCACAC 
    AAGTCTATAA ACAAACATTC AAAACCCACA TTTTAAGTTA CTTAAGCT

AT4G29080.1

Model type
Protein coding
Short Description
phytochrome-associated protein 2
Curator Summary
phytochrome-associated protein 2 (PAP2)
Computational Description
phytochrome-associated protein 2 (PAP2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 8 (TAIR:AT2G22670.4); Has 2237 Blast hits to 2234 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2235; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29090.1

Model type
Protein coding
Short Description
Ribonuclease H-like superfamily protein
Computational Description
Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR