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GT16746

CSHL Arabidopsis genetrap mutant lines

Original: GT16746

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16746

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5409891 [Map]; Strand: w
      • AT1G15730.1 - [+] show detail - Cobalamin biosynthesis CobW-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16746 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TTCATCTCAC TCGACAGATG AAACCTCCTT GAACCATCGG TTCGCTTCTG 
    CTAGGCTCAG TACAGCCACA GTTTCCCTCA GAACGAAGTC GTCATCGTTC 
    TATTCCGCGG CGCTTTACTC TGACAGCCGT CGGAGATTCG ACTCCGCCGT 
    TGCCTCTGAT TCCTCGCTCG CCGTTGTAGA TGATGAAGAT ATCTTCGATG 
    TTGCCAGTGA GATTTTGCCC GACAATCGAA TTCCGGCCAC TATAATCACC 
    GGGTTCCTGG GCTCTGGTAA GGTGAGGCTA ATCTAGGGTT CATGATTCGG 
    AAATTCCTGC TCAATTTTGA GCGATCAGAT TCTGAATTTC ACTGGAGTTG 
    TTTTTTTCTG AGTGTATAGA CAACATTGCT AAACCATATA TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5409939 [Map]; Strand: w
      • AT1G15730.1 - [+] show detail - Cobalamin biosynthesis CobW-like protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G15740.1 - [+] show detail - Leucine-rich repeat family protein
        Distance: -969; Region: promoter
    Flanking Genome Sequence: GT16746 - 5-prime edge 
    TCCCTCCTAC TTTCTCCCTG GATGAAGCAA GGAAAGTCGT GGCTATGTCG 
    AGTTTCAACA GCGTCGCCAT TGTTATTAGG GTTCAAGGTA TTCTGTGAAG 
    GTTCGGACAT AGAGATAGAC AGTTAGACAC TTGGCTAGCT TCAGAATTTA 
    CG

AT1G15730.1

Model type
Protein coding
Short Description
Cobalamin biosynthesis CobW-like protein
Computational Description
Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 17 (TAIR:AT1G80480.1); Has 16369 Blast hits to 11834 proteins in 1861 species: Archae - 128; Bacteria - 8189; Metazoa - 1729; Fungi - 553; Plants - 409; Viruses - 6; Other Eukaryotes - 5355 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15740.1

Model type
Protein coding
Short Description
Leucine-rich repeat family protein
Computational Description
Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).
Link
InterPro Scan - TAIR