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GT16769

CSHL Arabidopsis genetrap mutant lines

Original: GT16769

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16769

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5247744 [Map]; Strand: w
      • AT3G15510.1 - [+] show detail - NAC domain containing protein 2
        Distance: 2362; Region: intergenic
      • AT3G15518.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1368; Region: intergenic
    Flanking Genome Sequence: GT16769 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTCTT 
    ATTGTACAAT CCATTTAAAT GAAATGTATT TACTGGTTTC TTAATTTAAT 
    AATCTATATC CACATAATGT AACGGTTGTT TTTGCTTTTC TATACATAGC 
    TGTCCTCGAG CTTCGTTGTG CATTTTCCAT GCCTTTTACT TGCTGTTCTT

AT3G15510.1

Model type
Protein coding
Short Description
NAC domain containing protein 2
Curator Summary
Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.
Computational Description
NAC domain containing protein 2 (NAC2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G52880.1); Has 3051 Blast hits to 3043 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3049; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G15518.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR