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GT16793

CSHL Arabidopsis genetrap mutant lines

Original: GT16793

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16793

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18611405 [Map]; Strand: c
      • AT2G45140.1 - [+] show detail - plant VAP homolog 12
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16793 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC ATCAGGTCCT 
    CTTCTGAAGT TTTAGGTTTG TCTCTCTTTC TTTTTGTTAT TGATCTCCAA
    TGGATAAAAG ATGAGGAAAT TTACTAGTTT TGGGATCATG GTTTTGAATT
    TTTGTTTTGT TTTTTAATTA GTGACCATGC AAGCTCAAAA GGAAGCTCCT
    GCTGATCTGC AGTGTAAAGA TAAGTTCTTG CTTCAATGTG TAGTCGCTAG
    TCCCGGAGCC ACCCCCAAGG ATGTTACTCA TGAGATGGTA TTACTATTTT
    TTATTATTTA ATTTGGAAGC TTTGGTTACT TAAGACAGTG TTTTATCGTG
    TAATGATGAA CACTGCAGTT TAGCAAAGAG GCAGGGCATC GAGTTGAAGA
    GACTAAATTG AAAGTTGTCT ATGTTGCTCC ACCACGACCA CCATCACCGG
    TTCGAGAAGG ATCTGAAGAG GGCTCTTCAC CGAGGGCTTC TGTCTCTGAT
    AATGGGAATG CTTCTGATTT TACTGCTGTA AGTAACACAC ATCTCTTGCT
    GAGATATCAT AGATTTTTTG TACTAGTGTT GATTTCCTTG CGTTATCTTT
    AATTTAGGCT CCAAGATTTA GCGCAGACAG GGTTGATGCT CAGGATAATT
    CATCTGAGGT AATTTAATAA CCCATCTGAC GCTT

AT2G45140.1

Model type
Protein coding
Short Description
plant VAP homolog 12
Curator Summary
Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.
Computational Description
plant VAP homolog 12 (PVA12); FUNCTIONS IN: structural molecule activity; LOCATED IN: cytosol, endoplasmic reticulum, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 140; Plants - 434; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link
InterPro Scan - TAIR