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GT16794

CSHL Arabidopsis genetrap mutant lines

Original: GT16794

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16794

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1845476 [Map]; Strand: w
      • AT3G06110.2 - [+] show detail - MAPK phosphatase 2
        Distance: 700; Region: intergenic
      • AT3G06120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1055; Region: intergenic
    Flanking Genome Sequence: GT16794 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCCTTTG 
    GAGCTAGCAA ACATAAAGTT CAGTTGTTCA TCTCACTCGA CGACTCATTA
    AGATTCCTCC CGAGAAGTAT TCTTAAATTA TATTATTTAT TTTTAATAAA
    GAGATATTCG TAAAATTTCG GCTCTGTTTT GTAAAGTTAA CAATATCTCA
    ATTCATATTA CAAACTTCAT TAAATAAGGT TTTAACCTAA CCAAAAAATT
    GCTATAGTGA CAATATTTTT TCTATGAAAC AAACCCACTT GGATAACACT
    TCTATTTGTG GTTTTGTTTG GACAAACGTT TATTTTTATG GTTCATATAT
    GCATATCCAC ATATACATTA TCTCCGAAGT CCCAAAACTG TGGAAGCAGC
    TGGAATGAAA ATGTTGGTGA CAAATGTTTG TAGCCGCAAA TGTTAGGCTA
    CAATACGTAT AAGACATGCA AGGTGCATGC CCCATTTAAT TACGAGTAAA
    GAAATCTAAC TCCTACTTCG ATATTCAATT TGTTCATGGT CTATCACGTT
    ATATACAATA TTGATCGACA AGGCAATGAA ACAAGAAAAA GAAAAAAAAA
    AACTCCCGTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1845535 [Map]; Strand: w
      • AT3G06120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -996; Region: promoter
    Flanking Genome Sequence: GT16794 - 5-prime edge
    CTTTCTCCCT GCCAAGGTTA TATCAATTTA TGTTTTCTTG TAGAACCTAT 
    ATTTCATGCA AAAAGTTATC CATTAACCAA TGGAAATTGG TTCCGACTAG
    TGATCAAGGA AAATGATGGA ATCATCACGA ATGAGAAATT TGTGGTATTA
    AATGACATAG TGATTAAGGA AAACAAAAAG TTGTAATTCA ACTACAAACT
    ATGTCGTAAC TATTTATATT TTGTTACTTG TCAATGTTGT CATTTATCTT
    ACAAAATCAA TAGGATAGAA GATGTGAAAC ATAATTACAC AAAAACGATG
    TCATATAGAA ACATGCGAAA TCACATAATC ATTTCATCTC ACTCGA

AT3G06110.2

Model type
Protein coding
Short Description
MAPK phosphatase 2
Curator Summary
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Computational Description
MAPK phosphatase 2 (MKP2); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade, response to ozone, negative regulation of MAP kinase activity, response to stress; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase 1 (TAIR:AT3G23610.2); Has 4168 Blast hits to 4160 proteins in 377 species: Archae - 19; Bacteria - 125; Metazoa - 2129; Fungi - 477; Plants - 302; Viruses - 229; Other Eukaryotes - 887 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata.
Computational Description
MUTE (MUTE); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G24140.1); Has 1269 Blast hits to 1254 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1269; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR