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GT16807

CSHL Arabidopsis genetrap mutant lines

Original: GT16807

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16807

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5870789 [Map]; Strand: w
      • AT3G17200.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G17203.1 - [+] show detail - pseudogene, gibberellin 2 beta-hydroxylase, blastp match of 50% identity and...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16807 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATCTACAAC 
    TTAATGCATA ATTTTTTCCA TAAGCTAATC AATCCACACA TTAGATTAGG 
    TTCTGTCTTG AAGCAAACCA AAACTGAAGT CCATCTTCAT ATGTGAGTCT 
    TCCTCCACAC CGGATTGTAC TCAGTTTGTT GCGCATATTT TTGTCTATCA 
    TCTTAACCAG CTTCCCCACC GGAGATGGTT GTTCACCATG TCTTCTTGCA 
    TTCCTTTCAC CCCACACCGA ATGGATAGTG TTTTGGAACA CATGTTTGAT 
    GATGAAGTTT CTTGTTTTAT CTGAATCCCT TTCGCAAACG TAATTTAGAA 
    TGTCCTTCCA GTCCAATGAG AACCTGTGCT GAAGAATTGG CTTTGCTATA 
    TCCTCCCATA CCTTTCTTGA GTAAGTGCAA ACGAAAAAGA GATGGTCTCT 
    AGTTTCCATT GGCTCGTCAC AGAGACTACA ACTTGTGTTC ACGTGTTGAT 
    TCCACAAAAC CATTCTGTCT CCTGTTGCCA TTCTGTTTTT TGAAACTAAC 
    CATGTGATGA AAGAGTATTT GGGTGTGGAA TGAGAGAACC ATACTCCCTT 
    G

AT3G17200.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain no description (G3D.3.50.60.10); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain Clavaminate synthase-like (SSF51197)
Link
InterPro Scan - TAIR

AT3G17203.1

Model type
Pseudogene
Curator Summary
a pseudogene initially named GA2ox5 and thought to be a member of the gibberellin 2-oxidase enzyme family. It was later shown to have a large DNA insert in the putative gene model.
Computational Description
pseudogene, gibberellin 2 beta-hydroxylase, blastp match of 50% identity and 1.1e-66 P-value to GP|5579092|gb|AAD45424.1||AF100954 gibberellin 2-oxidase-like protein {Pisum sativum}
Link
InterPro Scan - TAIR