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GT16809

CSHL Arabidopsis genetrap mutant lines

Original: GT16809

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16809

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4220910 [Map]; Strand: w
      • AT5G13220.4 - [+] show detail - jasmonate-zim-domain protein 10
        Distance: 27; Region: intergenic
      • AT5G13225.1 - [+] show detail - snoRNA
        Distance: 1093; Region: intergenic
    Flanking Genome Sequence: GT16809 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAT CGTTTTCTTC CTTAGACAAC 
    CCAAGCTAGA GACCAACCAA TATAATCAAA GGTGAATGGC CACATTTCCT 
    TTAATAATAC TCTGATACGG AAGCTTCATG AGAAGCTAAA AGAGGCGTGT 
    TATAATTTTC TTTACCATAT ACTAAAAAAT AAAACAAAAG TAGAAGGTCA 
    CGGGATAAGA GAGAGCTTCT TAAATCAAGC TATCAATGAC AATAAAGATA 
    ATAGACATTT TTAAAAACAA ACCAATATAT ATAATCTTAG TAGGTAACGT 
    AATCTCCTAA AAACGTTTGT CGTGAATAGT ATACGATTTA GCAACGACGA 
    AGAAGGCTTC AAAAGAAGAT TGGAAATAAG CCAAATCCAA AAACGAACAT 
    GGATGTCTTC CGATTGAAAA AGACAAATTT GGTCCATGTC CCAATCTAAA 
    AAGAGATCGT TTAGGCCGAT GTCGGATAGT AAGGAGATGT TGATACTAAT 
    CTGCAAACAC AACAAGACGA AAAAGAAAAT GTGAAACCGC GTTTTGTGAT 
    AACTTATATA ATATACAGAT CTTTCTTTGG CCGTATGGCC TGATAAAAGT 
    AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4220970 [Map]; Strand: w
      • AT5G13220.4 - [+] show detail - jasmonate-zim-domain protein 10
        Distance: 87; Region: intergenic
      • AT5G13225.1 - [+] show detail - snoRNA
        Distance: 1033; Region: intergenic
    Flanking Genome Sequence: GT16809 - 5-prime edge 
    ACTTTCTCCC TGGGGTTGTC CTATTTGTTA TAAAGGAAAA CAGTTTAAGA 
    AACACGTGAG TATTAGTTAT ATAATACTAT CAAGTCTACC CGACTAATTG 
    TGTCTTTATG TCAAAAGTCT TTTAACATGA GTTTGGTGGA ATTTGTAAAT 
    TGGAATGAAG ATGAAGAGAA GTGGTAAAGT GAACGTACTT TGTGTGGCTT 
    CTTTTAGACA ATTACCCCTT TCATTGAATA GTATCCATCA CTAGTACTAA 
    CAAAAAAGGG ATGGCTGGTC CGGATTTAAG AAACAAAAAC CACACAACCA 
    TTCAATGCGT CTTCTTTATC ATTGAAACCA AGATACCGTA GCTTATTGAT 
    ATGAAATAAA TACCACCATG TGCATACGTG AGAGTTTTTT TATTACATGT 
    AGTTTCTTAA AAATGTTTTC GTGTCTCTTT AAGTTGTGTC AAGTAAATTG 
    CTTCTCATTT AATCTACTGC GATGACATAA ACTTAGTTTG CACATTGCAA 
    TGGCTAATGA GAGTACTAAA CTTACATCAT GTTGTTTAAG CTTTGAAGAT 
    GGAATACCGT ATATCAAGTT TTAATTAGTA GCTCTGATTC AGATGTTTGG 
    TTTAGATTCA GATTCAGATT AGTCAAGTGT TTGGTTTTGG TCAAGTTGAC 
    TGCATAAGCC AATCCTAATA TCTTTGATTC ATCACGAGTA ATTCAAATTA 
    ATTATTTCAT TCGATTTGGT CCAACAGTTT ATCCTGTTTC GTCTGGAAAA 
    AATCTAATAT ATCAACC

AT5G13220.4

Model type
Protein coding
Short Description
jasmonate-zim-domain protein 10
Computational Description
jasmonate-zim-domain protein 10; FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399); Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13225.1

Model type
Small nucleolar RNA
Short Description
snoRNA
Computational Description
snoRNA
Link
InterPro Scan - TAIR