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GT16823

CSHL Arabidopsis genetrap mutant lines

Original: GT16823

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16823

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2363106 [Map]; Strand: w
      • AT3G07380.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: -1092; Region: intergenic
      • AT3G07390.1 - [+] show detail - auxin-responsive family protein
        Distance: -2195; Region: intergenic
    Flanking Genome Sequence: GT16823 - 3-prime edge 
    TAGAGGTATT TTACCCACCG TTACCGACCG TTTTCATCCC TAAGTATATC 
    TTACCAGCAG CTCACTAAAA ATGAGAAAGA GATTACTTTT ACCTTTAAAT 
    GTCTGTTTTT GAAGATTTTG ATTATTTTGT CTTGGGATTA GCATCATGTG 
    TTAACTCTCT TGAAATGTAC TGGCACAAAT GTTTGAAACT AATCAAATCA 
    ATTTTTTTAT CATCTACTTT AAATTGTCTA AATATGATAG AAGAGTGCAT 
    CCAAATTCAA TTAATAAGAT AATTATATTT TTCTTTGACC AAATTAAAAA 
    GGATAAATAA ATATTGTTTG ACTGCATTAA AATTTCTACA ACTTGGATTG 
    ATAAGATTCG TTTTATTGAA TATGGTAGAT AGATATCCTC TTATTATTAA 
    AAAGAGAAGT ACAAATTGAA TTTTTGTCTA ATTTAGCCTC AATTTTGATT 
    TCAATTTTGA ATTTTGTTCT TCCTTATCAA GGGTAAAATC GTCCAAACCA 
    AATAACTAAA TTAAACAGGA TCCGCGTTTT ACATAGACGG GTGAGTTATG 
    TTTAATGGGC TTTTGATCAC ATGTAAAACT ACATAATGGG TTACCATCAA 
    GTAATGCAAT CTTAGCCATA ACACGATTAG TTGTATATCT CAACAATTTT 
    TAGTATCTAA TACACGCATA TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2363169 [Map]; Strand: w
      • AT3G07380.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: -1155; Region: intergenic
      • AT3G07390.1 - [+] show detail - auxin-responsive family protein
        Distance: -2132; Region: intergenic
    Flanking Genome Sequence: GT16823 - 5-prime edge 
    CTTTCTCCCT GGATATACTG TGTATGGAAC CAGGTGACGT GAGGGGAGAA 
    CTCGACGTTC AATATTTTGA GAATGTCTAT AAATGAGAGC CCAACACAGA 
    TATGGGCCCA AAGCCATTAG GTTTGCCTTC TGAAGACAAA TAATTAAACA 
    AAGAAAGACA AACAATATAC ATGGAATTTT GAAAATAACG ACCTCGTGCA 
    CAAAAAATAG AATAGGTAGC CATGATTAGA GACTAATGAC GTTCGTACAA 
    TAAAGTAAAA GAACAAAAGC GTGTGCAATT TCTTCTAACC CTTTTTCACC 
    CAATCTTCCT CCCAAATCTA TGGATGCTAA CTTTATATGA CGTCGTTAGG 
    TCTCTTTTGG TGAGACTCGT GTATACTTTT GTATATACTT CTTTTTGCGT 
    TTTTGTGATT GTACTTAATA CTTAATGTTT CTATATGATT GTTATAGTCT 
    CTTATTAAAT TCTTAATTAT CACTCTGTTT CTTTCTAGTT TCATCTCCAC 
    TCGAC

AT3G07380.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
Domain of unknown function (DUF23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G48190.1); Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07390.1

Model type
Protein coding
Short Description
auxin-responsive family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational Description
Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR