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GT16833

CSHL Arabidopsis genetrap mutant lines

Original: GT16833

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16833

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT16833 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CTGCTAGTGG TGGAAATCTG 
    AGTCCAATCA GTATCAAAAA ACGAAATCCA TCGGTGACCA TAGATATATC 
    ATCGGGTACC TGGAGATGTG AAGAAATTAT CTTAACTGTG GATTAAGTAG 
    ATAGAAATGG ACGATATCAG TTGTTTGTTT CATTGTTTTA TCAATTCTTA 
    TACTTGTTTA GGCCGTAGGT TTTTTAACAG AGCGAAACAG AGCACAAATG 
    AAGAGATAAT GAAGGATATA CCCGAAAGAA AATATTCACG GAACCAGACA 
    GACTTTTGAC TATAAGAATA CACTTAATCA ACTACTCTTT ATTAGTACAA 
    CAAGTAGACA ACACTCAAAA CTATCTTGCC ATGGGAACCA CGGAAGTGTC 
    CAAGTCAACG TTCATTTCAC TCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24039655 [Map]; Strand: w
      • AT5G59660.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: intron16 (CDS)
      • AT5G59662.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16833 - 5-prime edge 
    CTTTCTCCCT GCAGTAGCAA TATAACTATG ATCTACCAAA GACTGTGATT 
    ACAACTGCTG CCATACCTGC TAATACCAAT GCAGCATTGA AGCTTGAAAA 
    GAGTTGGCGT AATGTTGATC ACATATTATC CATACATGTA TTTTCGCTGA 
    GATCCAAGAA TTGCGTACTA ACGATACCAG AGAATTCAAC GTGGTGTGGA 
    ATGGGGAAGT TATGTCTGAT CCTATAATTT CTCAAAACTT ACAAAGAAAT 
    ACTATCCCTA GTTTGTCGCC GATGACTTGC AAAGGGACGC AATGCAGTTT 
    TCAGTTGATA AGAGCTAACA GATCAACTCT TCCACCTCTA CTTAATACTT 
    TTGAAGTGTC CACAGTTATC CAGTTCCCGC AATCCGAAAC AAAAGCAGCC 
    GATGGTACTT AGTAAGGAAA CAAACCATAG AGATTAGAGA CAAAAGAGTA 
    TTCAAAACCT GTTTAATCCT AACGCCGTAT CAACAGAACC TTTTCTGTGT 
    CAGTTGATGC TAGAGAAACT ATAAAAGTCA CCTATGGATT GAGTAAAACA 
    AATCTAAACA TGGTTGTGAT TTCTTATTAA ACGAAATAAT TAGGCTAATC 
    AACTCGAGAT GAATTTAATT AGGTGAGAGG AATCAAACAA ACGAAAAGAC 
    AGTCTTGTGG GACTCGTCTT ATATCATTGA TACCAATTCA TTATTGGTTC 
    ACGTG

AT5G59660.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59662.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59660
Link
InterPro Scan - TAIR