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GT16839

CSHL Arabidopsis genetrap mutant lines

Original: GT16839

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16839

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 461555 [Map]; Strand: w
      • AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
        Distance: 481; Region: intergenic
      • AT4G01070.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 37; Region: intergenic
    Flanking Genome Sequence: GT16839 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    CAAAAGTAAC ATAGATATTA GATCATCAAT GAGACATAGA TGTTAACAAT
    GTGTTTGTTT GGTAATGAGA TACGTTATGG GTTTTGATTG AAGATCGTCC
    GTTTCGTGGT TATGGATCAG AGATTTAAGG AAAAACTAAA AGTCTAAAAC
    GTGGATGACC AAGAAAATAA GTGTGTGTGT GTGGAGTAGG TGAAATAGCG
    TTAACGACAA ATATACATAA AACATGTGTG GGACCTGAAG ACAGCATGTC
    ATTTTATGAC TTGTAAAACG ACTTCCACTT TTGTTTTGTT TTGAAGTAGG
    TTATTTGCCA CTTTCATGTG TCAAGTGTTT AAGGCTTTAA GCAGAAATTA
    ATGAAATATC CACGTACAAC ATCTACGACT TAGCTTCTAG AAATTACTAG
    GATGGCAAAA AAATAAATTT AGGCTTGGAA GGCCCAAATA TTCGTAGCCC
    ACACAATAAA TGGTTCTTGA GAGTTAAATG GTTTGGGATT TAAGAAAGTT
    TTCTTCTTAT AACAGAGTTG GTAAATTTAA AATACAACGG AATATAATCG
    AAACAATCAG TGAAACTATA GAGATATATT GATCACTTTT CAATTTTTCA
    TGACCCAAAA CCTCTCAATT TCTCCAGCGG TTCTTCCTGG GATCCTCCCA
    GCTATCAGTT CCCACCTTTC ATCAAATAAT AACACACAAA ATT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 461629 [Map]; Strand: w
      • AT4G01070.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT4G01070.2 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT16839 - 5-prime edge
    CTTTCTCCCT GCTTTTGAGA TTACAACAAG TGTTTAAAAC TTAAACAAAC 
    GGTTATTTTA ACTATTGACG ATAGACGATG GATGATTTTC TTGAACAATA
    TTTAACTATA AATGCACCAT ATTCTTCTAA GCTGATCTTA AACTTACGAA
    TTAATCAACA GCCAAAAACA TATACAAATA AAAGTTGAGA CAAACGAAGC
    AAAGAAAAGT AGAACATACA TATACATACA GAAACACATT TGCACAAATC
    CCACCGTTGA TTATACAAAT CATATTAGAA CATCAAATAT TTAGTGGTTG
    CCATTTTGCT CTAACTCTTT TTTGTGGGCT TTCCACTTTA AGGCCACAAG
    ACTAAGTGCT TTTGTCGAAA TCCCATCATC CTTCAACACC CTACAAGCTG
    CTTCCTTCAA TTCCTTCATC TTGTTCCTCA CTCCTTTGCC TTCTTCACCT
    TCCATCAATC CTTTTACCAC TCTAGCCACC TCTTCTCTTC TAACTAACCC
    ATCGTCCCCG GCACGCGGCC TAAGTGCCGC ACGAATATCT TCACTCAACA
    AAACC

AT4G01060.1

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 2727 Blast hits to 2727 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2715; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01070.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta
Computational Description
GT72B1; FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: xenobiotic metabolic process, response to cyclopentenone, response to salt stress, response to toxin, xenobiotic catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7551 Blast hits to 7483 proteins in 336 species: Archae - 0; Bacteria - 81; Metazoa - 2271; Fungi - 41; Plants - 5061; Viruses - 34; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01070.2

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta
Computational Description
GT72B1; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1).
Link
InterPro Scan - TAIR