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GT16841

CSHL Arabidopsis genetrap mutant lines

Original: GT16841

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16841

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3127000 [Map]; Strand: c
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: 381; Region: intergenic
      • AT3G10120.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3072; Region: intergenic
    Flanking Genome Sequence: GT16841 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCT 
    ACCTAAAGTG TTATAATAAT GATAACTCTT TTTAAGGAAT GGAGAATTAA 
    ATTAAAATTT GTCATGTATA TATAAAGTTA TCATGTGGAA GAAGAGATTT 
    GTATGCATAG AAATGCATAT GATATGGATA ACATATTTTT ATTGGATATT 
    CATCATATTT TACAACAAAT TAAATTTATC AAATTTCCAT CTCTATCATG 
    TTCAAAAAAT TTCTGCCGCC ACCACTACGA GGGGAGTGCA CTACATTGTA 
    AGCAAAGGTA AATAAAATCC TCTAATTAGT AATCATTTTT TTTCTTATCT 
    TTGGCTTAAA TTTTTGCACA AAAAAAAATC TTTGGCTTAG ATCATCATTC 
    ATCAACATCC ACTATTACCA AAGAAAATAA TAAAAAGAAC CTATTTCTTC 
    CTTACCCACC CATTGTAGTT TTTATTCTTA ATCTTTACCT CTCTATATTA 
    CCTTTTCAGT GTCCCTAAAT CAACGGTCAA CGAAAATGTT AAAATCCACA 
    CTCGGTAAAA AAAAAGGTAC TGTTTTCTGG AAGGCCAAAG TTTCTGCCGA 
    CCAAAGAAAA AGTAAAATAA AGAATAAAAT TACTGATAAC CCACTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3126925 [Map]; Strand: c
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: 306; Region: intergenic
      • AT3G10120.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3147; Region: intergenic
    Flanking Genome Sequence: GT16841 - 5-prime edge 
    GGTACTACTG TATATGTCGT TGATCATCTA TACAATGAAA AATAGACCGC 
    AGAACATTAG CAATGATTTA GAATATAATT CACAATTTTC AGGTGATTTT 
    GGTACGGACT CAAGTTGTCG CTGCATA

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10120.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits to 57 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR