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GT16846

CSHL Arabidopsis genetrap mutant lines

Original: GT16846

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16846

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12488664 [Map]; Strand: c
      • AT4G24040.1 - [+] show detail - trehalase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16846 - 3-prime edge 
    CGTTACCGAC CGTTTTCATC CCTAATGACC AGCCAGTGCC AGTGGAGACG 
    CTTGAAAAGT TCGTCAAGGA ATATTTTGAC GGTGCAGGGG AGGATCTGCT 
    GCACCACGAA CCAGTAGATT TCGTCTCAGA TCCCTCCGGC TTCCTCTCCA 
    ACGTGGAGAA CGAAGAAGTC AGAGAAAGGG CGCGTGAGGT ACACGGTCTT 
    TGGAGAAATC TGAGCTGCAG AGTCTCTGAC TCAGTAAGAG AGTCTGCCGA 
    CCGGCACACG CTTCTACCGA TGCCGGAACC GGTTATCATT CCCGGTTCGA 
    GATTCAGAGA AGTCTATTAC TGGGATTCTT ATTGGGTCAT CAAGTAAGTC 
    ATTGTTTCCA ACTTTTAAAT CCCAAATCAA ATGTTTTTTG TTTTTTGTTA 
    TTAAATTGAT TTCCTCTCCT TTCGTGTTGA CTACGTAACA CAAGCTAACG 
    TGTCAGTATG TCACCGTCTT GTAACACGTG CTTTTGCACA TG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 82823 [Map]; Strand: w
      • AT5G01200.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 4280; Region: intergenic
      • AT5G01215.1 - [+] show detail - other RNA
        Distance: 1484; Region: intergenic
    Flanking Genome Sequence: GT16846 - 5-prime edge 
    CTTTCTCCCT GTTTGATGTC ATATCTACTA TTATTAAATT CATATATACA 
    TCTAACGATA CAATTTAATT TATCTATGTT ATGTACTGTT ATTTTTCATG 
    ATTCTCAGCT GATAAGACAT TATACATATC CAAATCGAAT GCTTTTGAAT 
    AAGTGCACAG AAGTTAATAG AAAGTAAGCA TCAAATTCTA TATTAACATT 
    TCCACACTAT TTTAATATTC ATTGCATTTG CATACATATA CATATGTATA 
    TGATTCTAAA AGTTTTGAAA ATAGCATAAC AAGAAATTAA TAAGTGGTAA 
    AAATATTAAA TGTCATCAAC CGTTAAATAT TAACTATTCA AGTAAGAAAT 
    CGTATTAAAA TACTACTATG TTACAAATCT TCGTTTTTTT TTGTCCGAAA 
    CAAAACAGAG CTTGTGTTCC CCATGCAATT AATCTTGGGA TCTAAAAAAC 
    AAGTGAAAAA GGCAGACTTG TTAAGTTTCC TATGAGATTT ATATTGCCAG 
    AGGATTAGAT TTTTTGTGCA TGAGTACATA CTCATAAAAT TAAAGAAGAA 
    AAAAAGCAGA AGAGTAGGTC TTAACGCTCC ATCTGTTTCC CATGGAAGCT 
    ATCT

AT4G24040.1

Model type
Protein coding
Short Description
trehalase 1
Curator Summary
Encodes a trehalase, member of Glycoside Hydrolase Family 37.
Computational Description
trehalase 1 (TRE1); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 37 (InterPro:IPR001661), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 37, conserved site (InterPro:IPR018232); Has 1925 Blast hits to 1909 proteins in 569 species: Archae - 2; Bacteria - 1056; Metazoa - 507; Fungi - 235; Plants - 71; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01200.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT2G38090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01210
Link
InterPro Scan - TAIR