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GT16851

CSHL Arabidopsis genetrap mutant lines

Original: GT16851

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16851

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2407482 [Map]; Strand: w
      • AT3G07540.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16851 - 3-prime edge 
    TTAAGTCACT CTTTCGTCCT CAGATAGTGC GCATTGCAGA ACACAAAATC 
    TCTACAAGAA AACCCCAAAA ATGGACGGAC TTTGCTACGT CATCTTCATC 
    ATCTTCTCCC TGCTATCCTG CGCTTTCTCT CCCTTATCAT ACGCCTCTCC 
    GGCCACTTTC AGTCGCCGTC ACCTTCTTCA AGCTCCTGTA ACTGATCCTT 
    CCACATTCTC ACCGCCGTTC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2407811 [Map]; Strand: w
      • AT3G07540.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: -270; Region: promoter
    Flanking Genome Sequence: GT16851 - 5-prime edge 
    CTAGACTACA TTTCTATTTG CCAAATATTG TTATTTTGTC TCGTGTTATG 
    GAATACTATG TAATCCTATT CAAATTAATC AAGAGTAGTA TATAGTTGGG 
    CTAAAATGTC TGAAAAAGAA AAAGAAAAAG TAGAACAAGC AATGCAGCAT 
    GCTTTGTCTT TTATTTGTCT TATCCACATT TTTCGTGAAT AATAAATATA 
    TAATCTCCAA AAAAACTACT ACGTAATTAT GGAAATTGAA TTAACTAGTG 
    CATTAGTTTG AAACGCCATC AAGCTTTTCA GCTTTTTGGT CAATTAAACT 
    TTTGCATGTT TTTGGGACTT TATTTGAATT TCGATTTAGC TTTCAATGAG 
    AAATGGTGGT GTGGCATAAA TTAATCAGCA TAGTTTTTAA GGATGCAAGA 
    GAGTCATATG ACGCCTAAGA AGAAAGGCAA TAAGAAGAAG GAAGCGTACT 
    GCACAAACAA AACAAATAGC GCAATAGCTT CGTTGTAGAG ACAAGGATTG 
    GTTTGGCCAT ATTGAGATTA ATTGTTACAA CACACCATGT GTTCATTCAC 
    GTACCTCCAT TTTTGGATGT TTAGTAGAAA ACAAATGTTA TATTTACCCA

AT3G07540.1

Model type
Protein coding
Short Description
Actin-binding FH2 (formin homology 2) family protein
Computational Description
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT5G48360.1); Has 4151 Blast hits to 3580 proteins in 346 species: Archae - 0; Bacteria - 185; Metazoa - 1758; Fungi - 365; Plants - 898; Viruses - 103; Other Eukaryotes - 842 (source: NCBI BLink).
Link
InterPro Scan - TAIR