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GT16852

CSHL Arabidopsis genetrap mutant lines

Original: GT16852

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16852

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2407722 [Map]; Strand: w
      • AT3G07540.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: -181; Region: promoter
    Flanking Genome Sequence: GT16852 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCGTAG 
    ATAAAGATAG TAGTCTCGAC TTTAATAATT GGTTTGCATA GAAAAGAGAA 
    GATAGTGTTT TGTATAGTAC TAGGCAAAAG TCAAAAAGAT TCTTTTGAAA 
    GAGAGGACCC AAATTTACTT GACGTAATTA TTGCATTTCA TATACGTTCT 
    T

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11577998 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: -508; Region: promoter
    Flanking Genome Sequence: GT16852 - 5-prime edge 
    TACCTGTAAG TCCATAAACA CAATTAGGAC ATGAACATGG TAAACAAAAA 
    AAGAAAACAT CATGCTAATA AGTCAATAGA GAATTAGAGA TATACAACCT 
    CGAGCCCAAG TTAGACTTCT TTAATAATGG TTAGGCTCAG ACCATCGATT 
    GCTTTAGGCC TGGGTAAATA AACCTAACCA AATGGATACT AAAATTCTAT 
    AACCGAATGA ACCGAAACTA AATTAGTATT GAACCGAAAT ATTTATTTAT 
    AAAATTCGAG CTCAGACTCG CACTTAACAT CTAACCCGAA CTTAAACAGA 
    ACAAATCGGC TGTGACGTCA GGTAAAAACC AGTCCGCCCG AAAGCTGAGC 
    TCGAAGCTTG CAGATGACTT ATAATTTAGT CGATCTAAAA ACCTAATTTC 
    AAGATTAGGA ATCCGATCAA GTTAATACAT AATCAACCGA CAAAG

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT3G07540.1

Model type
Protein coding
Short Description
Actin-binding FH2 (formin homology 2) family protein
Computational Description
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT5G48360.1); Has 4151 Blast hits to 3580 proteins in 346 species: Archae - 0; Bacteria - 185; Metazoa - 1758; Fungi - 365; Plants - 898; Viruses - 103; Other Eukaryotes - 842 (source: NCBI BLink).
Link
InterPro Scan - TAIR